Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq515 84.2 6e-12 >seq515 Length=2727018 Score = 84.2 bits (92), Expect = 6e-12 Identities = 185/272 (68%), Gaps = 19/272 (7%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| || ||||| ||| ||||||| | || || || || || || | || ||||| Sbjct 2713354 TGGGTGCTATGGAAGAGTAGCTCCCCGTTCTGGCTTGGCTGCGAAACACTTCATAGATGT 2713295 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 | ||||| || || ||| ||| | ||| || || || |||||||| |||||||||| Sbjct 2713294 AAGAGCTGGCGTCATAGATGAAGATTATAGAGGAAATGTGGGTGTTGTGCTATTTAATTT 2713235 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || |||||| | ||||| ||| | |||| ||| Sbjct 2713234 TGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTATGA 2713178 Query 1142 AAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGGAAAG 1195 | | | |||| ||||| |||||| ||| ||| || || || | ||||| Sbjct 2713177 A----CGGATTTTTGATCCA--GAAATAGAGGAAGTTCAGGTTTTGGATGACACTGAAAG 2713124 Query 1196 GGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 |||||| | ||| ||||| ||||| |||||| Sbjct 2713123 GGGTTCAGGAGGTTTTGGTTCTACTGGGAAGA 2713092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138679164317724