Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq566 107 2e-18 seq1153 84.2 2e-11 >seq566 Length=2972453 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | ||| || || || ||||| || || |||||||| | Sbjct 801013 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 801072 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| |||||||| || | | ||| || || || || Sbjct 801073 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 801132 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || || |||| | |||||| | ||||| Sbjct 801133 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801192 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || |||||||| Sbjct 801193 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq1153 Length=1501042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | |||| |||| || Sbjct 1169117 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 1169058 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || ||||| ||||| || || || || Sbjct 1169057 TTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGGATCTTC 1168998 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 1168997 CCTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 1168938 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 || || || || || ||||||||||| Sbjct 1168937 AAGGTCTTCACGAAGATCTGCATGGT 1168912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271256958003