Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq517 361 6e-95
seq1407 199 5e-46
seq630 111 2e-19
>seq517
Length=11963285
Score = 361 bits (400), Expect = 6e-95
Identities = 687/1001 (69%), Gaps = 13/1001 (1%)
Strand=Plus/Minus
Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096
||| | | |||| |||||||| || |||| ||| |||| ||| || | ||||| |||
Sbjct 8484758 CAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGT 8484699
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || |||| ||||| | ||| |||| ||||||| || ||| || |
Sbjct 8484698 GTCAAACTTGTTGGCAAACAAGTGGTG--CTTTC-GTAGCATCCAGTTCAAGTCACCTGC 8484642
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||||| || || || ||||| | ||| || ||| |||| || ||||| | || || ||
Sbjct 8484641 TCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCCCCCTT 8484582
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
| || |||||||| ||||||||||||| || ||||| || ||||| |||||||| ||
Sbjct 8484581 GGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAGA 8484522
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
|||| || || | | |||| | | || || || |||| || | ||| | ||
Sbjct 8484521 CATGTCATACTTCTGGCTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATAGT 8484462
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396
|||||| || | || || || ||||| ||||| || | ||| ||||| |||| |||
Sbjct 8484461 GGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGGAT 8484402
Query 160397 -TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455
| | || | || || | || || || | || |||||||| || ||||
Sbjct 8484401 CTTTTCATTCTCT-AGCACATAGCCCACATACTTCCTACTGACCACAAAGTAGGCACTGC 8484343
Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACC 160514
| ||||| | || | | ||| || ||| ||| |||| || ||||| | || |
Sbjct 8484342 CCGAGAACAGGGGCGTTTCAAGAGGAGG-GTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 8484284
Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT 160574
||| || || | | | |||| |||||||| | | || | | |||||| |
Sbjct 8484283 TTTCCATTAACAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTC 8484224
Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634
|| | |||||| ||||| | || | |||||| |||| | ||| ||||| |||||
Sbjct 8484223 TCGGACTCTAGGCTGTTTTCGCCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTG 8484164
Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG 160694
|| || | || || || | ||||| | ||||||| |||| |||| | || ||||
Sbjct 8484163 GTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACTCATC 8484104
Query 160695 TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754
|| ||||| |||||| || | || ||||| || || ||||| || || |||||
Sbjct 8484103 CGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACC 8484044
Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC 160814
||| |||| || | ||||||||| ||||||||| ||| || || |||| |||| ||||
Sbjct 8484043 ACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACC 8483984
Query 160815 GC---CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871
|| || |||| | ||| | | | |||| ||||||||| | ||| || || ||||||
Sbjct 8483983 GCGGCCAAAAAGGA-ATCCTCT--GATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGA 8483927
Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931
||| ||||||||||| || | ||| || | ||| || || || ||||| | ||| |||
Sbjct 8483926 GGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATA 8483867
Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGC 160991
|| || || || |||||||| | ||| || ||| |||| | | | || || |||
Sbjct 8483866 GAATATGCAATGGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGC 8483807
Query 160992 GTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032
|||||| ||| ||| ||||| | |||||||| |||||
Sbjct 8483806 CTCTTGACGAAAGAATTGCAATCTCTGGTCATGTTTATATA 8483766
>seq1407
Length=12655370
Score = 199 bits (220), Expect = 5e-46
Identities = 237/320 (74%), Gaps = 6/320 (2%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
|| || | ||| | |||||| || ||||| || || || || || |||||||||||| ||
Sbjct 7010829 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 7010770
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || ||||| ||||||| |||||||||||| || || | |||||||| ||| ||
Sbjct 7010769 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGAGTTCC 7010710
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| |
Sbjct 7010709 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 7010650
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||||||||| ||||||| || ||||| ||||| || |||||||| || || ||||
Sbjct 7010649 CTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 7010590
Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
|| || | ||| | ||||| || ||||| | ||||| || ||||||||||| |||
Sbjct 7010589 ACTTCCT---CGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCT 7010533
Query 168450 CGCTCATCTTGAGTTACGAC 168469
|||||||| || || ||
Sbjct 7010532 TCTTCATCTTGGGTCACCAC 7010513
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 167903 AGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATC 167962
||| |||| ||||| |||| ||| || ||||| || || || || ||||| || ||
Sbjct 7013546 AGTCCCCAGGTGTAGCACCTGGCAGATTACCTCC---TTCCCCACCTGGCTCTTGGGGTC 7013490
Query 167963 TTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGT 168022
||| || || | | || || ||| || || |||||| | ||| | | | | ||
Sbjct 7013489 TTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATTGGGGTGTGAGAGAATCTCAGT 7013430
Query 168023 GCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGT 168082
||||| ||||||||||| || | ||||||||| | || ||||| || || || || |
Sbjct 7013429 ACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATT 7013370
Query 168083 AGCAGAGCAGGTAATATTTA 168102
|||||||| || |||||||
Sbjct 7013369 GGCAGAGCAAGTGATATTTA 7013350
>seq630
Length=7021237
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||||||| | || |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 3715428 AGATATTTTGCGAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 3715369
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || |||||||||| || || || || ||||| | || || | | |||
Sbjct 3715368 GGAATATAATTCTCATAATTTTCCCTAGACGGCCCCAAAACAACAGGGACAGAGCCGGCT 3715309
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | ||||| |||||||| |||||| || |||| ||||||||||||||||
Sbjct 3715308 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAC 3715249
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 3715248 AGATAAAATTTGCA 3715235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577208528660040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |