Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq517 361 6e-95 seq1407 199 5e-46 seq630 111 2e-19 >seq517 Length=11963285 Score = 361 bits (400), Expect = 6e-95 Identities = 687/1001 (69%), Gaps = 13/1001 (1%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | |||| |||||||| || |||| ||| |||| ||| || | ||||| ||| Sbjct 8484758 CAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGT 8484699 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||| ||||| | ||| |||| ||||||| || ||| || | Sbjct 8484698 GTCAAACTTGTTGGCAAACAAGTGGTG--CTTTC-GTAGCATCCAGTTCAAGTCACCTGC 8484642 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||||| || || || ||||| | ||| || ||| |||| || ||||| | || || || Sbjct 8484641 TCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCCCCCTT 8484582 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || |||||||| ||||||||||||| || ||||| || ||||| |||||||| || Sbjct 8484581 GGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAGA 8484522 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 |||| || || | | |||| | | || || || |||| || | ||| | || Sbjct 8484521 CATGTCATACTTCTGGCTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATAGT 8484462 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||| || | || || || ||||| ||||| || | ||| ||||| |||| ||| Sbjct 8484461 GGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGGAT 8484402 Query 160397 -TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | | || | || || | || || || | || |||||||| || |||| Sbjct 8484401 CTTTTCATTCTCT-AGCACATAGCCCACATACTTCCTACTGACCACAAAGTAGGCACTGC 8484343 Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACC 160514 | ||||| | || | | ||| || ||| ||| |||| || ||||| | || | Sbjct 8484342 CCGAGAACAGGGGCGTTTCAAGAGGAGG-GTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 8484284 Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT 160574 ||| || || | | | |||| |||||||| | | || | | |||||| | Sbjct 8484283 TTTCCATTAACAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTC 8484224 Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 || | |||||| ||||| | || | |||||| |||| | ||| ||||| ||||| Sbjct 8484223 TCGGACTCTAGGCTGTTTTCGCCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTG 8484164 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGG 160694 || || | || || || | ||||| | ||||||| |||| |||| | || |||| Sbjct 8484163 GTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACTCATC 8484104 Query 160695 TCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACT 160754 || ||||| |||||| || | || ||||| || || ||||| || || ||||| Sbjct 8484103 CGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATACACC 8484044 Query 160755 ACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC 160814 ||| |||| || | ||||||||| ||||||||| ||| || || |||| |||| |||| Sbjct 8484043 ACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACC 8483984 Query 160815 GC---CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 || || |||| | ||| | | | |||| ||||||||| | ||| || || |||||| Sbjct 8483983 GCGGCCAAAAAGGA-ATCCTCT--GATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGA 8483927 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 ||| ||||||||||| || | ||| || | ||| || || || ||||| | ||| ||| Sbjct 8483926 GGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATA 8483867 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGC 160991 || || || || |||||||| | ||| || ||| |||| | | | || || ||| Sbjct 8483866 GAATATGCAATGGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGC 8483807 Query 160992 GTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| ||| ||| ||||| | |||||||| ||||| Sbjct 8483806 CTCTTGACGAAAGAATTGCAATCTCTGGTCATGTTTATATA 8483766 >seq1407 Length=12655370 Score = 199 bits (220), Expect = 5e-46 Identities = 237/320 (74%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | |||||| || ||||| || || || || || |||||||||||| || Sbjct 7010829 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 7010770 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||||||||| || || | |||||||| ||| || Sbjct 7010769 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGAGTTCC 7010710 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 7010709 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 7010650 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| ||||| || |||||||| || || |||| Sbjct 7010649 CTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 7010590 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || | ||| | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 7010589 ACTTCCT---CGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCT 7010533 Query 168450 CGCTCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 7010532 TCTTCATCTTGGGTCACCAC 7010513 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 167903 AGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATC 167962 ||| |||| ||||| |||| ||| || ||||| || || || || ||||| || || Sbjct 7013546 AGTCCCCAGGTGTAGCACCTGGCAGATTACCTCC---TTCCCCACCTGGCTCTTGGGGTC 7013490 Query 167963 TTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGT 168022 ||| || || | | || || ||| || || |||||| | ||| | | | | || Sbjct 7013489 TTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATTGGGGTGTGAGAGAATCTCAGT 7013430 Query 168023 GCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGT 168082 ||||| ||||||||||| || | ||||||||| | || ||||| || || || || | Sbjct 7013429 ACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATT 7013370 Query 168083 AGCAGAGCAGGTAATATTTA 168102 |||||||| || ||||||| Sbjct 7013369 GGCAGAGCAAGTGATATTTA 7013350 >seq630 Length=7021237 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | || |||| || |||| |||||| | ||||| || |||| | || | Sbjct 3715428 AGATATTTTGCGAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 3715369 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || ||||| | || || | | ||| Sbjct 3715368 GGAATATAATTCTCATAATTTTCCCTAGACGGCCCCAAAACAACAGGGACAGAGCCGGCT 3715309 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 3715308 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAC 3715249 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 3715248 AGATAAAATTTGCA 3715235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577208528660040