Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq797 107 6e-18 seq546 84.2 6e-11 >seq797 Length=2049103 Score = 107 bits (118), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || ||| || ||||| || || || || || | ||||| ||||| ||||| Sbjct 489093 ACCAGTCTCAGCTGTCTTGACAGCGGTGTCGATGAGCCCCTCGCGACCCCCCATGGCATG 489152 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| ||||| || || Sbjct 489153 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCTCGGC 489211 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||||||| | |||| |||| | ||||| |||||||||| || || ||||| | | Sbjct 489212 TCTCGGGCCCGTAGTCGTCCTTGATGAAGTGGGGCAGGGTCCGGTGCTTGAAGCCGAACG 489271 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 489272 GGATCCGCTTGCCCTCTACGTTCTGCTGCCC 489302 >seq546 Length=6731090 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||| | ||| | | ||| ||||| || |||||| Sbjct 4279647 GCTTCACCTGAGGACATTAAAAAGTCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 4279588 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 4279587 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 4279528 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 ||| | || ||||||| |||||| Sbjct 4279527 GAAGTATTATCAAATAACGAAAAA 4279504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471789709516423