Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq547 118 9e-22 >seq547 Length=10008264 Score = 118 bits (130), Expect = 9e-22 Identities = 500/774 (65%), Gaps = 82/774 (11%) Strand=Plus/Minus Query 1040 GTCTAGTTGTTCTGGTTTCTTGTAAATATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAG 1099 |||||||||||| | |||| | | || |||| ||||||| ||||| ||||| Sbjct 1763463 GTCTAGTTGTTCCCATCTCTTCCTGGTGTATCCGCAGCCCTAGCTTGGGGTCT-AAAAAT 1763405 Query 1100 AGTAGGTTTCTCTTGAGAGTTAA-GGAAGGCATTTTAAAGAAAAGGCTTAGaaaaaaaaT 1158 |||||| ||| | | | || ||||||||||||||||||| ||| | || || |||| Sbjct 1763404 AGTAGGCCTCTTCTAGGGGCAAACGGAAGGCATTTTAAAGAAATGGCCTGGAGAAGAAAT 1763345 Query 1159 CTGGT-GGGCACTTACATATTCTTCCATAAGTT--TTGAAAATGAGAACTGTAGTTCTGT 1215 ||| |||||||||| || |||| || |||| || | ||| | | ||| ||| Sbjct 1763344 CTGTAAGGGCACTTACGTAGTCTTGCAAAAGTCCCTTAGACATGGG--CCGTAATTCCAA 1763287 Query 1216 GATTACAGCTGATTGTATGTCCCGTGGT---AGTGGATGGCCG---------TGGGAGGA 1263 ||||| | | | | ||| | |||| ||| ||||| | ||||||| Sbjct 1763286 GATTAT---TTTTCGGACGTCACTTGGTTGTAGTCGATGGGTGGGTGCCATATGGGAGGG 1763230 Query 1264 GAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAAT 1323 ||||||| | | ||||||||||| |||||||||| || | | | || | ||| Sbjct 1763229 CAGCAAGGTTTCCATGCAGCAGAGCAGAAACAGGGCAAACCTGGCGGGTCCTGGAGAAAA 1763170 Query 1324 AGAGTAATGC------CCACACACCCCCACCTGCCCCATACCTTAACCTGCCCAAGCTTT 1377 | | | |||| |||| || || ||||| | || ||| || | Sbjct 1763169 AAAATGATGCTGTGGGCCACGTGGCCAGAC--GCCCCCTGCCCA------CCCCAGTTGC 1763118 Query 1378 CACCACCGAAGCTGTGCCGGA-------CTG----AGCCCCATCCAGTCTTTCTCTTTGT 1426 ||||||||||| || || ||| |||||| ||||| | | ||| | | Sbjct 1763117 AACCACCGAAGCCGTTGTTGAGCAACCACTGGCCAAGCCCC-TCCAGAGTCT-TCTCTAT 1763060 Query 1427 CTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTATCGATACCTGAG 1486 | | | || |||| | | || | | || ||| ||| | | |||||| Sbjct 1763059 CCAACGGGACGAGACCACGCTCATGA--AACA--GGCATCAGGGCACAGTAGTACCTGCA 1763004 Query 1487 GGGGATACTATAGCAGGAGAGAGCG---AGGCCGCCGCTTTGGCAACAGCTGCTAGAGTG 1543 |||| | || || |||||||| ||| | | ||| |||||||||| |||||| Sbjct 1763003 TGGGAGAGCATGGC--GAGAGAGCACACAGGGC-CTGCTCCGGCAACAGCTTCTAGAGCT 1762947 Query 1544 AGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGG---AGGA 1600 |||||||||||| || | |||| | ||||||||||| |||||| ||| | || Sbjct 1762946 AGATGTGCTCGCCATGGCCTCTGGGAGAT--ATATAAAGGGCCAGTTGTGAGGGAAAAGA 1762889 Query 1601 GCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACA-TTTC 1648 || | || || ||||||| || ||| ||||| ||||| |||||| |||| Sbjct 1762888 GCGATCAACGTCCCGCCCATGGCAAAATCATTGCTCAGCTTTTCTCCAGAAAACACTTTC 1762829 Query 1649 AAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTACCC 1705 || || |||| || ||| | ||||| | || |||||||||| | ||||||| Sbjct 1762828 AATATTCTGCCCCACGAGGCTGGGTGAAAGCGGGACTGGAAGGAAATGCTGAGGTTACCC 1762769 Query 1706 TTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG---GCACCCACA 1756 | ||| ||||||||||| |||| || | || | |||||| || |||| |||| Sbjct 1762768 TCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACACAGGAAAGCACACACA 1762715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438551892122000