Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1477 114 3e-20 seq825 105 1e-17 seq648 104 5e-17 seq424 96.9 7e-15 seq536 87.8 4e-12 seq747 86.0 1e-11 >seq1477 Length=8748460 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || ||||| || || || ||||| | | | | || ||||| ||||| || || Sbjct 7843798 AGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCC 7843857 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| | || || |||| ||||| ||| |||||||||| ||||||| ||||| Sbjct 7843858 AGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCTTT 7843917 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 | | |||| || ||||| ||||| || || | | | || ||||| ||||| | || Sbjct 7843918 CATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGGGT 7843977 Query 82793 CTTTACAAATATCTGCAT 82810 || ||||| | ||||| Sbjct 7843978 TTTCACAAAATTTTGCAT 7843995 >seq825 Length=8281254 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || | ||||||| | | || ||||| ||||| Sbjct 4962370 TGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGTTGC 4962429 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | || ||||| ||||| || ||||| ||||| |||||| |||||| |||||||| Sbjct 4962430 TTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATCTTG 4962489 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || ||||||||||| || ||||| ||||| || || | ||| || |||| Sbjct 4962490 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGATCTT 4962542 >seq648 Length=20061788 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || ||||| ||||| ||||| || ||||| |||| |||||||||||| Sbjct 17362450 TCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCCTTA 17362509 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || ||||||||||| || |||| ||||| | || |||| || Sbjct 17362510 TCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCAAGTGATA 17362569 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || | || || || | | |||||||| Sbjct 17362570 ATCTTCCCCATAAAAGTTTTCATGGAAATCTGCAT 17362604 >seq424 Length=11562000 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || |||||||| ||||| || || || | | | ||||| || || ||||| || Sbjct 7321992 GTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCCC 7321933 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || | || || | |||| || | || || || ||||| ||||| || || ||||| Sbjct 7321932 ACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 7321873 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || |||||||| | || || || | || || |||||||| || |||| Sbjct 7321872 ACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTC 7321815 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||||||||| Sbjct 7321814 TTCACAAATATCTGCAT 7321798 >seq536 Length=25944906 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| |||| || ||||| ||| | |||| Sbjct 23770587 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAG----AGTTCC 23770532 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| |||||||| || || |||||||| || |||| |||||| || || | ||| Sbjct 23770531 TTATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTG 23770472 Query 82773 ATCGTCTTGCC 82783 || ||||| || Sbjct 23770471 ATGGTCTTCCC 23770461 >seq747 Length=14734251 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | || || || || || || ||||| || || ||| Sbjct 10993016 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 10992957 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| | Sbjct 10992956 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 10992897 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | ||||| || |||| Sbjct 10992896 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 10992860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981808594681381