Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1477 114 3e-20
seq825 105 1e-17
seq648 104 5e-17
seq424 96.9 7e-15
seq536 87.8 4e-12
seq747 86.0 1e-11
>seq1477
Length=8748460
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672
||| || || ||||| || || || ||||| | | | | || ||||| ||||| || ||
Sbjct 7843798 AGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCC 7843857
Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732
||||||||| | || || |||| ||||| ||| |||||||||| ||||||| |||||
Sbjct 7843858 AGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTCCTTATCCCGAATCTTGGCTTT 7843917
Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792
| | |||| || ||||| ||||| || || | | | || ||||| ||||| | ||
Sbjct 7843918 CATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGGGT 7843977
Query 82793 CTTTACAAATATCTGCAT 82810
|| ||||| | |||||
Sbjct 7843978 TTTCACAAAATTTTGCAT 7843995
>seq825
Length=8281254
Score = 105 bits (116), Expect = 1e-17
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || | ||||||| | | || ||||| |||||
Sbjct 4962370 TGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGTTGC 4962429
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| | || ||||| ||||| || ||||| ||||| |||||| |||||| ||||||||
Sbjct 4962430 TTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATCTTG 4962489
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780
|| ||||||||||| || ||||| ||||| || || | ||| || ||||
Sbjct 4962490 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGATCTT 4962542
>seq648
Length=20061788
Score = 104 bits (114), Expect = 5e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| ||||| || ||||| ||||| ||||| || ||||| |||| ||||||||||||
Sbjct 17362450 TCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCCTTA 17362509
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| || ||||||||||| || |||| ||||| | || |||| ||
Sbjct 17362510 TCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCAAGTGATA 17362569
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || | || || || | | ||||||||
Sbjct 17362570 ATCTTCCCCATAAAAGTTTTCATGGAAATCTGCAT 17362604
>seq424
Length=11562000
Score = 96.9 bits (106), Expect = 7e-15
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673
|| || |||||||| ||||| || || || | | | ||||| || || ||||| ||
Sbjct 7321992 GTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCCC 7321933
Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733
|| | || || | |||| || | || || || ||||| ||||| || || |||||
Sbjct 7321932 ACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 7321873
Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793
|| || || || |||||||| | || || || | || || |||||||| || ||||
Sbjct 7321872 ACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTC 7321815
Query 82794 TTTACAAATATCTGCAT 82810
|| ||||||||||||||
Sbjct 7321814 TTCACAAATATCTGCAT 7321798
>seq536
Length=25944906
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 4/131 (3%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| ||||| || ||||||||||| |||| || ||||| ||| | ||||
Sbjct 23770587 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAG----AGTTCC 23770532
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| |||||||| || || |||||||| || |||| |||||| || || | |||
Sbjct 23770531 TTATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTG 23770472
Query 82773 ATCGTCTTGCC 82783
|| ||||| ||
Sbjct 23770471 ATGGTCTTCCC 23770461
>seq747
Length=14734251
Score = 86.0 bits (94), Expect = 1e-11
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| | |||||||||| | || || || || || || ||||| || || |||
Sbjct 10993016 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 10992957
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || ||| | || ||||||||||| | ||| |||||||| |
Sbjct 10992956 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 10992897
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
| ||| | || ||||| ||| | ||||| || ||||
Sbjct 10992896 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 10992860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981808594681381
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |