Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq566 138 1e-27 seq424 102 8e-17 seq303 96.9 3e-15 seq648 95.1 1e-14 seq738 86.0 6e-12 seq653 82.4 7e-11 >seq566 Length=2972453 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | ||||| ||||||||||| Sbjct 801043 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGCC 801101 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || ||||||||||| || || |||||| ||| Sbjct 801102 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 801161 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 801162 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 801221 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 801222 CTTCACGAAGATCTGCAT 801239 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | ||||| |||||||||| Sbjct 801270 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 801328 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 801329 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 801388 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 801389 TCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 801448 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 801449 TCTTCACGAAGATTTGCAT 801467 >seq424 Length=11562000 Score = 102 bits (112), Expect = 8e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| || | ||| |||||| ||||| ||||| Sbjct 7321993 GGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCC 7321934 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | | |||| || ||| | ||||| | |||||||| |||||||| ||| ||| || | Sbjct 7321933 CACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 7321875 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| || ||| | || || ||| ||| ||||| | ||||| ||| ||||| || | Sbjct 7321874 TGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CG 7321817 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 7321816 TCTTCACAAATATCTGCAT 7321798 >seq303 Length=12076657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 4860413 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 4860354 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || ||||||||||| || | |||||| |||||| | || |||| | Sbjct 4860353 GCCAGCAAAAATCAGACGCTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 4860295 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 4860294 CTTTGACATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 4860235 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 4860234 GGGTCTCCACAAAGATCTGC 4860215 >seq648 Length=20061788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||| | || || ||| | | || |||| ||||| |||| Sbjct 12805508 GGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTGGCCAG-CCTCCAGCTGTTTGC 12805450 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| | |||||||| | || ||| |||| || ||||| ||| || | Sbjct 12805449 CCGCGAAAATCGGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTTGACTT 12805390 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| |||||| || || | |||| || |||||| |||| | Sbjct 12805389 TGACGTTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTGGTGGCTTTGCCCATCAGGG 12805330 Query 133642 TTTTTACGAAAATCTG 133657 | || || || ||||| Sbjct 12805329 TCTTCACAAAGATCTG 12805314 >seq738 Length=7307337 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTT-GCCCGCGTAAA--TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCC 133562 || || ||| |||| ||| || ||| |||||| ||||||||| || ||| ||||| Sbjct 4320414 TCTTCCAGCAGCTTTGCCTGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCT 4320355 Query 133563 TTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTG 133622 || || |||||| || | | ||||| ||||| ||||||||||| || | ||| Sbjct 4320354 TTATCTTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTG 4320295 Query 133623 ACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| ||||| || || | || |||||||| Sbjct 4320294 ACGGTCTTGCCAGTCAGGGTCTTCGCAAACATCTGCAT 4320257 >seq653 Length=2310022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| |||| ||| || | | | ||||| ||| Sbjct 236898 AAGTGCAGGGTGGACTCTTTCTGGATATGGTAGTCTGAGAGAATTCAGCCATCCTCCAGC 236957 Query 133515 TG-CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||| || | |||| || |||||||||| || ||||||| |||| ||| ||| Sbjct 236958 TGTTTTGTCCACAAAAATCAGATGCTGCTGGTCAGGGAGGATGCCCTCCTCGTCTTGGAT 237017 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | |||| ||||| ||||||| || | || ||||| |||||||| Sbjct 237018 -TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTTGAGGGTGATGGTTTTGC 237076 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGC 133658 | |||| || || | || ||||| Sbjct 237077 CCATCAGGGTCTTCAGAAAGCTCTGC 237102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411862757960