Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq566 138 1e-27
seq424 102 8e-17
seq303 96.9 3e-15
seq648 95.1 1e-14
seq738 86.0 6e-12
seq653 82.4 7e-11
>seq566
Length=2972453
Score = 138 bits (152), Expect = 1e-27
Identities = 151/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || |||||||| | ||| | | | ||||| |||||||||||
Sbjct 801043 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGCC 801101
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||||||||| || ||||||||||| || || |||||| |||
Sbjct 801102 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 801161
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||| |||||||||| || | ||||| ||| ||||||||||| ||
Sbjct 801162 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 801221
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 801222 CTTCACGAAGATCTGCAT 801239
Score = 131 bits (144), Expect = 2e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || |||||||| | ||| | | | ||||| ||||||||||
Sbjct 801270 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 801328
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| ||||| || |||||| ||
Sbjct 801329 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 801388
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| |
Sbjct 801389 TCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 801448
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| || |||||
Sbjct 801449 TCTTCACGAAGATTTGCAT 801467
>seq424
Length=11562000
Score = 102 bits (112), Expect = 8e-17
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||||||||| |||||||| || | ||| |||||| ||||| |||||
Sbjct 7321993 GGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCCTCCAGCTGTTTGCC 7321934
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581
| | |||| || ||| | ||||| | |||||||| |||||||| ||| ||| || |
Sbjct 7321933 CACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 7321875
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| || ||| | || || ||| ||| ||||| | ||||| ||| ||||| || |
Sbjct 7321874 TGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CG 7321817
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 7321816 TCTTCACAAATATCTGCAT 7321798
>seq303
Length=12076657
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519
|| ||||||||||||||| ||||||| || ||| | || || ||||| ||
Sbjct 4860413 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 4860354
Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579
||| || |||| || ||||||||||| || | |||||| |||||| | || |||| |
Sbjct 4860353 GCCAGCAAAAATCAGACGCTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 4860295
Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| |||| | |||| ||||| ||||||| || |||| || || ||| ||||| |||
Sbjct 4860294 CTTTGACATCCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 4860235
Query 133639 GAGTTTTTACGAAAATCTGC 133658
| || | || || ||||||
Sbjct 4860234 GGGTCTCCACAAAGATCTGC 4860215
>seq648
Length=20061788
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| |||||| | || || ||| | | || |||| ||||| ||||
Sbjct 12805508 GGTGGACTCTTTCTGGATATTGCAGTCTGACAGAGTGTGGCCAG-CCTCCAGCTGTTTGC 12805450
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| |||| | |||||||| | || ||| |||| || ||||| ||| || |
Sbjct 12805449 CCGCGAAAATCGGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTTGGATTTTGACTT 12805390
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| ||||| |||||| || || | |||| || |||||| |||| |
Sbjct 12805389 TGACGTTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTGGTGGCTTTGCCCATCAGGG 12805330
Query 133642 TTTTTACGAAAATCTG 133657
| || || || |||||
Sbjct 12805329 TCTTCACAAAGATCTG 12805314
>seq738
Length=7307337
Score = 86.0 bits (94), Expect = 6e-12
Identities = 115/158 (73%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTT-GCCCGCGTAAA--TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCC 133562
|| || ||| |||| ||| || ||| |||||| ||||||||| || ||| |||||
Sbjct 4320414 TCTTCCAGCAGCTTTGCCTGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCT 4320355
Query 133563 TTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTG 133622
|| || |||||| || | | ||||| ||||| ||||||||||| || | |||
Sbjct 4320354 TTATCTTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTG 4320295
Query 133623 ACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||||| ||||| || || | || ||||||||
Sbjct 4320294 ACGGTCTTGCCAGTCAGGGTCTTCGCAAACATCTGCAT 4320257
>seq653
Length=2310022
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/206 (70%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||||||||| |||| ||| || | | | ||||| |||
Sbjct 236898 AAGTGCAGGGTGGACTCTTTCTGGATATGGTAGTCTGAGAGAATTCAGCCATCCTCCAGC 236957
Query 133515 TG-CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||| || | |||| || |||||||||| || ||||||| |||| ||| |||
Sbjct 236958 TGTTTTGTCCACAAAAATCAGATGCTGCTGGTCAGGGAGGATGCCCTCCTCGTCTTGGAT 237017
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | |||| ||||| ||||||| || | || ||||| ||||||||
Sbjct 237018 -TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTTGAGGGTGATGGTTTTGC 237076
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGC 133658
| |||| || || | || |||||
Sbjct 237077 CCATCAGGGTCTTCAGAAAGCTCTGC 237102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483411862757960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |