Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq517 320 2e-82
seq1407 221 1e-52
seq623 86.0 7e-12
>seq517
Length=11963285
Score = 320 bits (354), Expect = 2e-82
Identities = 636/933 (68%), Gaps = 19/933 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| || || || |||| ||| || | |||||||| || || | ||| |||
Sbjct 8484759 CCAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 8484700
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| |||||||| || |||| ||| ||| ||| | | ||||| || | || || |
Sbjct 8484699 TGTCAAACTTGTTGGCAAACAAGTGGTGCT--TTCGT-AGCATCCAGTTCAAGTCACCTG 8484643
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || ||||| || |||||||| || |||||||| || || || ||||||| |
Sbjct 8484642 CTCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCCCCCT 8484583
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| ||||| || || |||| |||||||| |||||||| | ||| || |||||||| |
Sbjct 8484582 TGGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAG 8484523
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||| ||||| | || | || || | || || || | || | ||||| | |
Sbjct 8484522 ACATGTCATACTTCTGG-CTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATA 8484464
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | || |||||||| || || || || | ||||||||| |||| | |
Sbjct 8484463 GTGGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGG 8484404
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| | ||| || | ||| | || || || ||| | || | |||||| || ||
Sbjct 8484403 ATCTTTTCATTCTCTAGCACATAGCCCACATACTTCCTACTGACCACAAAGTAGGCACTG 8484344
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| || |||| ||| | | ||||||| || |||||| ||||||||| | |
Sbjct 8484343 CCCGAGAACAGGGGCGTTTCAAGAGGAGGGTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 8484284
Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593
|||| | || || ||| | ||| ||||||| | | ||| ||| | |
Sbjct 8484283 TTTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 8484228
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
|||| |||||| ||||| ||| || | || |||| || || ||||| ||
Sbjct 8484227 TCTCTCGGACTCTAGGCTGTTTTCGCCCATTAACGATTTGAGCTTCCGGACAATCTCCAG 8484168
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
||||| |||| || || || ||||||| ||||| || | || |||| | | ||
Sbjct 8484167 GTTGGTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACT 8484108
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| | ||| || || || | ||||| || |||||||| || |||||||| || || ||
Sbjct 8484107 CATCCGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATA 8484048
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
||| |||||||||| | | |||| || ||||| || ||| || || | || |||||
Sbjct 8484047 CACCACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCAT 8483988
Query 162834 CAC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890
||| ||||| || | ||| || | ||| || || ||||| | |||||| |||||
Sbjct 8483987 CACCGCGGCCAAAAAGGA-ATCC--TCTGATTTTCTGTCCACGTGAATGCAGTAGAGATT 8483931
Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950
|||||| |||||||||||||| | || || | ||| || || || || || |||||
Sbjct 8483930 CTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCAC 8483871
Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
|||||||| || ||||| ||||| ||||| ||
Sbjct 8483870 TATAGAATATGCAATGGGAAACTCTGCCTCTTC 8483838
>seq1407
Length=12655370
Score = 221 bits (244), Expect = 1e-52
Identities = 242/322 (75%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| || || || || || ||||| ||||||||||| || | |
Sbjct 7010834 CAGAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGC 7010775
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| ||||||| |||||| ||||| || || | || || || |||
Sbjct 7010774 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGA 7010715
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|| | || || || ||||| | | |||||| || | ||||||||| ||||| || || |
Sbjct 7010714 GTTCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 7010655
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || |
Sbjct 7010654 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAA 7010595
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||||| | | |||| |||||||||||||| |||||||||||||||| | |
Sbjct 7010594 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 7010535
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| ||| ||||| || |||||
Sbjct 7010534 CTTCTTCATCTTGGGTCACCAC 7010513
Score = 111 bits (122), Expect = 2e-19
Identities = 175/249 (70%), Gaps = 9/249 (4%)
Strand=Plus/Minus
Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564
|||||| |||| | || | |||||||| ||||| || | ||| || ||||||| |
Sbjct 7013567 AGTTTGCCTGACGCTGGTCATAGTCCCCAGGTGTAGCACCTGGCAGATTACCTCCT---T 7013511
Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624
||||| || || || || ||||| || || || | || || ||||| || ||||| ||
Sbjct 7013510 CCCCACCTGGCTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATT 7013451
Query 171625 ACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681
| ||| |||| | | |||||| ||||| || || || || | || ||||| |
Sbjct 7013450 GGGGTGTGAGAGAA---TCTCAGTACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGA 7013394
Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741
|| ||||| ||||| | ||| | ||||||||||| || |||| |||||||| ||
Sbjct 7013393 GATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTACGTGGTCTTCGAAAAA 7013334
Query 171742 CTCATAGTG 171750
| ||||||
Sbjct 7013333 TTTATAGTG 7013325
>seq623
Length=19124984
Score = 86.0 bits (94), Expect = 7e-12
Identities = 224/336 (67%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | |||||||| || || || ||| | | ||||||
Sbjct 2679552 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTATTTAGTAAGTATTTC 2679493
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | ||| | || | | || || | | ||||||||| || ||||| || |
Sbjct 2679492 CA--TGGCACTGGGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 2679435
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || | ||||| || |||| | |||||||| ||| || |
Sbjct 2679434 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTGGGAAGCATG 2679375
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | |||| ||| ||||| |
Sbjct 2679374 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAT 2679317
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
|||||||| ||||||||||| || | || | || ||||| || || | ||||| ||
Sbjct 2679316 GCAGTATATGTTCTGAGGGGCATACACAGCTCGGAGCAATCTTTCAAAGTTTTCTATTTT 2679257
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| || || || || || ||||| ||
Sbjct 2679256 CTCATGGACCACCATTGAGTAGGCAATAGGGAAGTC 2679221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578421306238400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |