Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq517 320 2e-82 seq1407 221 1e-52 seq623 86.0 7e-12 >seq517 Length=11963285 Score = 320 bits (354), Expect = 2e-82 Identities = 636/933 (68%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| || || || |||| ||| || | |||||||| || || | ||| ||| Sbjct 8484759 CCAGGGCTTTGTGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 8484700 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| ||| | | ||||| || | || || | Sbjct 8484699 TGTCAAACTTGTTGGCAAACAAGTGGTGCT--TTCGT-AGCATCCAGTTCAAGTCACCTG 8484643 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||||||| || |||||||| || || || ||||||| | Sbjct 8484642 CTCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCCCCCT 8484583 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| |||||||| | ||| || |||||||| | Sbjct 8484582 TGGAGACATCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAG 8484523 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | ||||| | | Sbjct 8484522 ACATGTCATACTTCTGG-CTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATA 8484464 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || |||||||| || || || || | ||||||||| |||| | | Sbjct 8484463 GTGGCCCAGAGATACTCATCTGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGG 8484404 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | | ||| || | ||| | || || || ||| | || | |||||| || || Sbjct 8484403 ATCTTTTCATTCTCTAGCACATAGCCCACATACTTCCTACTGACCACAAAGTAGGCACTG 8484344 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || || |||| ||| | | ||||||| || |||||| ||||||||| | | Sbjct 8484343 CCCGAGAACAGGGGCGTTTCAAGAGGAGGGTGCATTTTGTCCGTCCCCGTGTTGGTCAGC 8484284 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 8484283 TTTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 8484228 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 |||| |||||| ||||| ||| || | || |||| || || ||||| || Sbjct 8484227 TCTCTCGGACTCTAGGCTGTTTTCGCCCATTAACGATTTGAGCTTCCGGACAATCTCCAG 8484168 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| || || || ||||||| ||||| || | || |||| | | || Sbjct 8484167 GTTGGTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCTGCACT 8484108 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || || || | ||||| || |||||||| || |||||||| || || || Sbjct 8484107 CATCCGGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAAGAGGCATA 8484048 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| |||||||||| | | |||| || ||||| || ||| || || | || ||||| Sbjct 8484047 CACCACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCAT 8483988 Query 162834 CAC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| ||||| || | ||| || | ||| || || ||||| | |||||| ||||| Sbjct 8483987 CACCGCGGCCAAAAAGGA-ATCC--TCTGATTTTCTGTCCACGTGAATGCAGTAGAGATT 8483931 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 8483930 CTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCAC 8483871 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||||| || ||||| ||||| ||||| || Sbjct 8483870 TATAGAATATGCAATGGGAAACTCTGCCTCTTC 8483838 >seq1407 Length=12655370 Score = 221 bits (244), Expect = 1e-52 Identities = 242/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || ||||| ||||||||||| || | | Sbjct 7010834 CAGAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGC 7010775 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||| ||||| || || | || || || ||| Sbjct 7010774 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGA 7010715 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 7010714 GTTCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 7010655 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 7010654 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAA 7010595 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||||||| |||||||||||||||| | | Sbjct 7010594 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 7010535 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| ||||| || ||||| Sbjct 7010534 CTTCTTCATCTTGGGTCACCAC 7010513 Score = 111 bits (122), Expect = 2e-19 Identities = 175/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564 |||||| |||| | || | |||||||| ||||| || | ||| || ||||||| | Sbjct 7013567 AGTTTGCCTGACGCTGGTCATAGTCCCCAGGTGTAGCACCTGGCAGATTACCTCCT---T 7013511 Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624 ||||| || || || || ||||| || || || | || || ||||| || ||||| || Sbjct 7013510 CCCCACCTGGCTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATT 7013451 Query 171625 ACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 | ||| |||| | | |||||| ||||| || || || || | || ||||| | Sbjct 7013450 GGGGTGTGAGAGAA---TCTCAGTACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGA 7013394 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||| | ||| | ||||||||||| || |||| |||||||| || Sbjct 7013393 GATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTACGTGGTCTTCGAAAAA 7013334 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 7013333 TTTATAGTG 7013325 >seq623 Length=19124984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 2679552 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTATTTAGTAAGTATTTC 2679493 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||| | || | | || || | | ||||||||| || ||||| || | Sbjct 2679492 CA--TGGCACTGGGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 2679435 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 2679434 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCATGAAGACATTTGGGAAGCATG 2679375 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | |||| ||| ||||| | Sbjct 2679374 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAT 2679317 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | || ||||| || || | ||||| || Sbjct 2679316 GCAGTATATGTTCTGAGGGGCATACACAGCTCGGAGCAATCTTTCAAAGTTTTCTATTTT 2679257 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| || || || || || ||||| || Sbjct 2679256 CTCATGGACCACCATTGAGTAGGCAATAGGGAAGTC 2679221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578421306238400