Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1407 284 1e-71 seq702 172 6e-38 seq489 163 3e-35 seq1085 141 1e-28 seq694 134 2e-26 >seq1407 Length=12655370 Score = 284 bits (314), Expect = 1e-71 Identities = 255/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | |||||||||||| || || ||| | | |||||| ||| Sbjct 7010513 GTGGTGACCCAAGATGAAGAAGAGCTGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 7010572 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||||||||| | | ||||| Sbjct 7010573 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAA 7010632 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| || |||||||| || |||||||||||| Sbjct 7010633 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 7010692 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| | |||| | ||||||||||| || || |||||||||||| | Sbjct 7010693 ATAAACATCACCCAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTG 7010752 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| || || ||||| || ||||| ||||| || Sbjct 7010753 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGA 7010812 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 7010813 AAAGCCTGCCTCACCCTCTC 7010832 Score = 217 bits (240), Expect = 2e-51 Identities = 217/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || ||||||||||| || |||||| | || |||| Sbjct 7013299 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTTTTCGAAGACCACGTAAATATCA 7013358 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| | Sbjct 7013359 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGGA 7013418 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| ||| |||| || || | ||||| || || ||||| || ||||| | Sbjct 7013419 TTGAAAACAGTACTGAGATTCTCTCACACCCCAATGGGACCACGTCTGTCACGAGTGTCC 7013478 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||| ||| |||| |||||||| |||||||| ||| |||| Sbjct 7013479 TCCAGGTCAAAGACCCCAAGAGCCAGGTGGGGAAGGAGGTAATCTGCCAGGTGCTACACC 7013538 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | | | || | | | ||| ||||| | ||| |||| Sbjct 7013539 TGGGGACTATGACCAGCGTCAGGCAAACTTTGGACAAAGGTA 7013580 >seq702 Length=8706000 Score = 172 bits (190), Expect = 6e-38 Identities = 542/825 (66%), Gaps = 41/825 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||| || ||||| | | |||||| Sbjct 4931079 GTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTGATCCTCAC 4931138 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 4931139 AAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAACTTGGCCATTTCTGA 4931198 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || | || |||||||||| | | || ||||| |||| Sbjct 4931199 CTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTAC--AGCAGGTGGAACGAGTGG 4931256 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| || |||| |||||||||| | | || |||| || ||| |||| Sbjct 4931257 GTG----TTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTATTACATGGGCTTGTA 4931312 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| | | || ||||||||| |||| | ||| |||| || || || || |||| Sbjct 4931313 CAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCGTCGTCCACGC 4931372 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | || | ||| || | | || ||| || ||| |||| |||| Sbjct 4931373 CGTGTTCGCCCTGCGGACCCGGACCGTCACTTTTGGTATCATCATGAGCGTCCTCACCTG 4931432 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCC---AATAATGC 9026 | ||||| | | | | | || | || || ||| |||| || | ||| ||| |||| Sbjct 4931433 GGGCCTGGCAGGGATAGCAGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAATGATGC 4931492 Query 9027 --CACAG-GCA--AGGGGGTCT-----GCCAAGCCTCCTACACAGACTTTTGGAAGGGGG 9076 |||| || | | || ||| | || | | || |||||| | Sbjct 4931493 TGAACAGTACATCTGTTTGCCTCTTTATCCAGGAGGCCAAGA-GGATAACTGGAAGCGTT 4931551 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | ||||||| ||| ||| || ||||||| |||| ||||||||| ||| Sbjct 4931552 TCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGGCCGTCT 4931611 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACC---TG 9192 ||||| | ||| | | | || || | | |||| ||| | ||||| | Sbjct 4931612 GCTACGCGGGAATTGTTAGGACACTGCTGAGATGCCC-CAATA-------AAACCAAGTA 4931663 Query 9193 C-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTA 9251 | | ||| || ||||||||| |||| ||||| | | ||| | || |||| |||||| Sbjct 4931664 CAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTA 4931723 Query 9252 CAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAG 9310 |||| | | ||| || | | | |||| | | | |||| || ||| ||||| Sbjct 4931724 CAACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGATCTTCTTTGAGGTCAG-TTGTGA-- 4931780 Query 9311 CGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACT 9367 || | ||| || | || ||||| | |||| | ||| ||||||||| ||| |||| Sbjct 4931781 -GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATCGCCTACACGCACT 4931839 Query 9368 GCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| ||||||||||||||||| || || || || | ||||| Sbjct 4931840 GCTGCGTTAACCCCGTCATCTACGCTTTCGTCGGGGAGAGGTTCC 4931884 Score = 116 bits (128), Expect = 4e-21 Identities = 250/370 (68%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||| ||||||| | | ||||| || Sbjct 4892482 GTACTCGCTGGTGTTCGTCATCGGCCTGGTGGGCAACATCCTGGTGCTGTTGGTCCTGAT 4892423 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| || ||||||| ||||| ||| ||||||||||| | ||| Sbjct 4892422 GCAGTACAAGAGGCTCAAGAGTATGACCAGCATCTACCTCCTCAACCTGGCCATCTCTGA 4892363 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| || ||||| |||||| ||| | | || || |||||| Sbjct 4892362 CCTGCTTTTCCTCTTCACGCTGCCCTTCTGGATTGACTACAAGCTGAAGGACAACTGGAT 4892303 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 | | || || |||| || ||| | | ||| |||| || | | ||| Sbjct 4892302 TTTCAG-CGACG-GCACC-----TGCAAGCTGCTCTCGGGGCTTTATTACATAGGCTTGT 4892250 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 ||||||| || | || ||||||||| |||| |||||||||| || || | || ||| Sbjct 4892249 ACAGCGAGATCTTTTTCATCATCCTGCTGACGGTGGACAGGTACCTGGCCATCGTCCACG 4892190 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | || ||| ||| ||| | | ||| ||||| |||| | ||||| Sbjct 4892189 CCGTGTTCGCCCTGCGGGTTCGCACGGTCCTCTTCGGCGTCCTCAGCAGCGCCGCGGCCT 4892130 Query 8969 GGATTCTGGC 8978 ||| ||||| Sbjct 4892129 GGAGCCTGGC 4892120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 4891766 TGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCG 4891707 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || ||||| || | ||||| Sbjct 4891706 TCATCTACGCCTTCGTGGGAGAGAGGTTCC 4891677 >seq489 Length=2104609 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 942545 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 942604 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || ||||||||||||| |||||| || || || |||| Sbjct 942605 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTT 942664 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || |||||||| || || ||||| Sbjct 942665 CACCACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCAT 942709 >seq1085 Length=18888332 Score = 141 bits (156), Expect = 1e-28 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 2186643 AGGGTTACCTGGGTTGCCAAGCGTTGTCCGAGATGATCCAGTTTTACTTGGAGGAGGTGA 2186584 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | | ||| ||||| || |||| || |||| Sbjct 2186583 TGCCCCAGGCTGAGAA------CGAG------GACCCAGACATCAAACAGCACGTGAACT 2186536 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| |||||||| | |||| |||||||| ||| Sbjct 2186535 CCCTGGGAGAAAAGCTGAAGACCCTCCGGCTGAGACTGCGGCGCTGT 2186489 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| ||| |||||||||| || || || ||||||| Sbjct 2184336 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 2184277 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 |||||||||||||||||| || |||| Sbjct 2184276 TAGAAGCTTACATGACAATGAAGATGA 2184250 >seq694 Length=2958536 Score = 134 bits (148), Expect = 2e-26 Identities = 194/269 (72%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 146867 TCAAA--ATCTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGG 146922 ||||| ||||| ||||| ||||| || | || | || ||| ||||| |||||||| Sbjct 60200 TCAAAGGATCTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTCAGC 60143 Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 |||| || || | ||||| | || || || |||| || || | ||||| | ||| Sbjct 60142 AGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCACTGGGC 60083 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||||| || ||| ||| | ||||||||||||| | ||||||| | ||| || Sbjct 60082 TTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACATTGGAG 60023 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 || || ||||||||||||| || || ||| |||| |||||||| || ||||| || | Sbjct 60022 GGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAGCTGGCAGGACAGCTCACCATTT 59963 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCA 147131 ||| ||| |||||||| ||| ||||| Sbjct 59962 TCCAGGTAGAACTGGCAAAGGGAATGGCA 59934 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 147372 GGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGA 147431 |||||| | | ||||||||| ||||||||||| || | ||| || || ||||| Sbjct 59711 GGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAATTCCCAAGCGTTTGTGGA 59652 Query 147432 GCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGT 147491 ||| ||| ||||| |||| |||||||||||| ||| || | || || ||||| || Sbjct 59651 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGAATACAGGTTTGGTTGT 59592 Query 147492 CAGCAGGGGGAACTGGTCCC 147511 |||||| || || | |||| Sbjct 59591 CAGCAGAGGAAATTCATCCC 59572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583477212765600