Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1153 116 4e-21 seq566 87.8 2e-12 seq1477 84.2 2e-11 seq602 84.2 2e-11 >seq1153 Length=1501042 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1169141 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169082 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 1169081 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169022 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| |||||||| || || || |||||| || | ||||| | ||||| Sbjct 1169021 ATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1168962 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 1168961 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1169369 CCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169310 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 1169309 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169250 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 1169249 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1169190 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 1169189 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || ||||| || ||||| ||||| || ||||||||||| | |||| | Sbjct 1169585 CGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 1169526 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||||||||| ||||| ||||| | |||||| || || || ||||| || || Sbjct 1169525 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1169466 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||||| || | ||||| | ||||| || || || ||| Sbjct 1169465 TCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 1169406 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || ||||| || ||||| Sbjct 1169405 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || ||||| || ||||| ||||| || ||||||||||| | |||| | Sbjct 1171014 CGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 1170955 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || ||||| ||||| | |||||| || || || ||||| || || Sbjct 1170954 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1170895 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||||| || | ||||| | ||||| || || || ||| Sbjct 1170894 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 1170835 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || ||||| || ||||| Sbjct 1170834 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1170798 CCTCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1170739 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 1170738 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1170679 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 1170678 ATGCCCTCCTTGTCCTGGATCTT 1170656 >seq566 Length=2972453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || || || || || || |||||||| || | Sbjct 801241 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 801300 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 801301 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 801360 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | ||||| | ||||| Sbjct 801361 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACC 801420 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 801421 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 801471 >seq1477 Length=8748460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||||| || || || |||| ||||| |||||||||||||| | ||| || | Sbjct 7843782 AGTCTCAACAAGA--TGAAG--TGGACTCCTTCTGAATGTTGTAGTCAGACAA-AGTACG 7843836 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| ||||||| |||||||| || || || |||| Sbjct 7843837 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACTCTGCTGATAAGGAGGAATTTCTTC 7843896 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || |||| || ||| | || | ||| || || | ||| || || | | | Sbjct 7843897 CTTATCCCGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACT 7843956 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 ||||| || || || | ||||| || ||| ||||||| ||| || Sbjct 7843957 GATGGTCTTTCCTGTAAGGGTTTTCACAAAATTTTGCATCTTGGTT 7844002 >seq602 Length=3264241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||||||||| || || |||| |||||||||||||||||||| | ||| || || Sbjct 2398642 AGTCTCAACACGAGATGAAGAATGGACTCCTTTTGAATGTTGTAGTCAGTCAAAGG-ATG 2398584 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | || |||| |||| |||| | ||||||| | || || || |||| Sbjct 2398583 TCCATCTTC-AATTGCCTGCCAGCAAGGATCAGTCTCTGCTGAACAGGAGGAATTTCTTC 2398525 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCC-AATGTGTCGGACGATTCCACGTCGAGAG 134673 || || ||||| | || | | ||| | ||| || || | |||||| ||||||| Sbjct 2398524 CTTATCCTGAATCCTGGCCTTTAACATTTCCTATTGTATCCGAGGGTTCCACCTCGAGAG 2398465 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| || | | | ||||| ||| |||| | ||| ||| Sbjct 2398464 TGATGGTCTTCACCCTAAGAGTTTCCACGGAAATCTACATCTTG 2398421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389056447080