Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1344 129 8e-25
seq722 123 3e-23
seq485 123 3e-23
seq515 87.8 2e-12
>seq1344
Length=6361600
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |
Sbjct 6043431 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 6043372
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | || ||||| |||||||||||||| ||||| ||||| ||||| |
Sbjct 6043371 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 6043312
Query 39759 CAACAAGTCTCTCTCC 39774
| |||| | ||||||
Sbjct 6043311 CCACAACCCGCTCTCC 6043296
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || || || || | ||||||||||| || |||||||||||||| || ||
Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
|| || || ||||| ||||| | ||||||||||| || || |||
Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331
>seq722
Length=1584642
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 1256639 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1256698
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 1256699 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1256758
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 1256759 TTTCTTATACCAT 1256771
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | || || || ||||| |
Sbjct 1278587 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCA 1278646
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | ||||| | || || ||| |||| ||||| || ||||
Sbjct 1278647 GGATGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 1278706
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | ||| || || || | |||| || || || ||||||||||
Sbjct 1278707 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCATGG 1278757
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || || ||||||| | | |
Sbjct 1266463 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1266522
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| ||
Sbjct 1266523 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1266582
Query 69715 TCTAGATATATCGC 69728
|| ||||| || ||
Sbjct 1266583 TCCAGATAAATAGC 1266596
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| || || || ||||| || |||||||| |||||
Sbjct 1273072 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1273131
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|||||||||||||| | || ||||| | |||||| || | | || | |||||||
Sbjct 1273132 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1273191
Query 70111 ATATGCTGAGGTCGTTC 70127
|||||||| |||| |||
Sbjct 1273192 ATATGCTGTGGTCTTTC 1273208
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1265779 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1265838
Query 69577 CA 69578
||
Sbjct 1265839 CA 1265840
>seq485
Length=11789088
Score = 123 bits (136), Expect = 3e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||||||||| ||||| | || ||
Sbjct 143827 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTC 143886
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| |||||||| ||
Sbjct 143887 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCTGCAAAAGCC 143946
Query 39761 ACAAGTCT 39768
|| | |||
Sbjct 143947 ACCACTCT 143954
>seq515
Length=2727018
Score = 87.8 bits (96), Expect = 2e-12
Identities = 236/355 (66%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 37348 CCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATTC 37407
|| || || ||||| ||| | || || || || |||| | | || ||||| |
Sbjct 2713097 CCAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCCAAAACCTGAACTTCCTCT 2713156
Query 37408 AGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATT 37467
| || |||| | | || |||| ||| || ||||| || |||| ||| ||| | || | |
Sbjct 2713157 ATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCACCCTTTTTGACT 2713216
Query 37468 TTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCA 37527
| ||| || ||| ||| ||| | || | || || | ||| || ||||||||||||
Sbjct 2713217 TCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCTCTATAATCTTCA 2713276
Query 37528 TCGATTACTCCGCCTCCTACATCAAT--ACCTTTTAG-AGACAAACCCGATCTAGGAGCT 37584
|| || || || ||| |||||| || | ||| | || ||| || || | ||||||
Sbjct 2713277 TCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCAGAACGGGGAGCT 2713336
Query 37585 ATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTT 37644
| ||||||||| || | | || ||| |||| || ||||| | ||| | |||
Sbjct 2713337 ACTCTTCCATAGCACCCAGAAGAAAGAGCTATCTGAATGTCCGTTTTCA-CAA-GGGCTT 2713394
Query 37645 TCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697
| ||| ||| | | |||||||| || || || || | ||| || |||| |||
Sbjct 2713395 TTTCCATAGGTGGTACTGTATAATCATAGGCACTGTACAGATCGTAGCCCGAGGC 2713449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686896100773560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |