Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1344 98.7 8e-16 seq489 95.1 1e-14 seq485 95.1 1e-14 seq700 86.0 5e-12 >seq1344 Length=6361600 Score = 98.7 bits (108), Expect = 8e-16 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| || || || |||||||| Sbjct 6041320 CGGTTTAGCCAAGAAGTTCAGATTA-CTGAAGCCCGCTGTTTCTACGGCTTCCAAATTGC 6041378 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||| ||||| || || || || ||||| |||||| Sbjct 6041379 CATGGAAAACATCCATTCTGAGATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 6041436 >seq489 Length=2104609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| | || || || ||| | || ||||| ||||| || |||||||||| Sbjct 942711 TGATGGCCCTACCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAACGGTGAACTGT 942652 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || ||||| || || ||||| |||||||| || || || || || ||||| || | Sbjct 942651 CCTGCCAGTTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAACATCGCCA 942592 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || | |||||||| || ||||| |||||| Sbjct 942591 GCTACTCCCTGCTCACCTACATGATCGCACAC 942560 >seq485 Length=11789088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 aaaaCCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| | Sbjct 134257 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 134198 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 134197 AACGAGTTGCAGAGTATCAACG 134176 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||||| |||||||| Sbjct 157494 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 157435 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 157434 TCCTTCTGGACAGCAGAAGAGGT 157412 >seq700 Length=4874906 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | ||||| ||||| ||||| ||||| Sbjct 271713 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGACGCCATCTGCAAGCAGAGAGGG 271654 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 271653 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 271594 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 271593 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 271552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448835731395