Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1344 98.7 8e-16
seq489 95.1 1e-14
seq485 95.1 1e-14
seq700 86.0 5e-12
>seq1344
Length=6361600
Score = 98.7 bits (108), Expect = 8e-16
Identities = 94/118 (80%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| | ||||| || ||||| || || || ||||||||
Sbjct 6041320 CGGTTTAGCCAAGAAGTTCAGATTA-CTGAAGCCCGCTGTTTCTACGGCTTCCAAATTGC 6041378
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| || ||||| ||||| || || || || ||||| ||||||
Sbjct 6041379 CATGGAAAACATCCATTCTGAGATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 6041436
>seq489
Length=2104609
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| | || || || ||| | || ||||| ||||| || ||||||||||
Sbjct 942711 TGATGGCCCTACCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAACGGTGAACTGT 942652
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || ||||| || || ||||| |||||||| || || || || || ||||| || |
Sbjct 942651 CCTGCCAGTTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAACATCGCCA 942592
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || | |||||||| || ||||| ||||||
Sbjct 942591 GCTACTCCCTGCTCACCTACATGATCGCACAC 942560
>seq485
Length=11789088
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 aaaaCCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| |
Sbjct 134257 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 134198
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| |||| ||| ||||| ||
Sbjct 134197 AACGAGTTGCAGAGTATCAACG 134176
Score = 87.8 bits (96), Expect = 1e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || || | |||||| ||| ||||||| ||||| ||||||||
Sbjct 157494 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 157435
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 157434 TCCTTCTGGACAGCAGAAGAGGT 157412
>seq700
Length=4874906
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | ||||| ||||| ||||| |||||
Sbjct 271713 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGACGCCATCTGCAAGCAGAGAGGG 271654
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | ||||| ||||||||||| ||||| || | ||||| ||| |
Sbjct 271653 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 271594
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| || || | || ||||| || || ||||| ||||| |||
Sbjct 271593 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 271552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397448835731395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |