Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1242 100 3e-16
seq649 91.5 2e-13
seq1344 89.7 6e-13
>seq1242
Length=9804611
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 4029480 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4029421
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| ||||||||||| |||||||| || |||
Sbjct 4029420 CCAATTGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4029361
Query 117425 ATCGT 117429
|| ||
Sbjct 4029360 ATAGT 4029356
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 4029480 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4029421
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | |||||| ||||| || ||||||||||||||||||
Sbjct 4029420 CCAATTGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4029361
Query 152149 ATCGT 152153
|| ||
Sbjct 4029360 ATAGT 4029356
>seq649
Length=4359621
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| |||||| |||||| || | ||||| || ||
Sbjct 3668703 GTGAAGATGTATCGAGGACTAGCAGAATCCTTACCACCATGCAGCCTGGTACCAAACTGA 3668762
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | |||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 3668763 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3668822
Query 117425 ATCGT 117429
|| ||
Sbjct 3668823 ATGGT 3668827
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||| ||||| ||||| || ||||||||
Sbjct 3668703 GTGAAGATGTATCGAGGACTAGCAGAATCCTTACCACCATGCAGCCTGGTACCAAACTGA 3668762
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||| | | |||||| || || ||| ||||| ||||||||||||||||| | |
Sbjct 3668763 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3668822
Query 152149 ATCGT 152153
|| ||
Sbjct 3668823 ATGGT 3668827
>seq1344
Length=6361600
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||||| ||||||||||| || || || |||||
Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || || | ||| |||||| |||||||| ||||| || ||||||||
Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310
Query 74892 ACAA 74895
||||
Sbjct 6043309 ACAA 6043306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547205883344200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |