Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq489 138 9e-28 seq550 87.8 1e-12 >seq489 Length=2104609 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 942549 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 942608 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| | ||| || || || || |||| | Sbjct 942609 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 942668 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 942669 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATCAG 942712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || |||||||||||||| || || || || || || | || || |||| Sbjct 945268 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 945327 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | |||| ||| || ||||||| |||| || ||| || ||||| |||||||| | Sbjct 945328 CTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGATTT 945387 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| || || || || | |||||| || || Sbjct 945388 TCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 945427 >seq550 Length=32697773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 9736947 TTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9736888 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || |||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 9736887 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 9736840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406303076128068