Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1153 111 1e-19 >seq1153 Length=1501042 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||| |||| ||||||||| |||||| || ||||| || || || Sbjct 1169595 CCCCCTC-AAG-CGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169538 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 1169537 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169478 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | |||||| Sbjct 1169477 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 1169419 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || ||||| || ||||||||| Sbjct 1169418 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 1169370 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||| |||| ||||||||| |||||| || ||||| || || || Sbjct 1171024 CCCCCTC-AAG-CGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1170967 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 1170966 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1170907 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | || ||||| | |||||| Sbjct 1170906 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 1170848 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || || || ||||| || ||||||||| Sbjct 1170847 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 1170799 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || || | |||| || |||||| |||||| || ||||| || || || Sbjct 1169370 GCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1169311 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 1169310 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 1169251 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||||| Sbjct 1169250 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCA 1169192 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | || ||||| || ||||||||| Sbjct 1169191 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 1169142 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || |||||| |||||| || ||||| || || || Sbjct 1170799 GCCTCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1170740 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || ||||| |||||||| || || | ||| ||||| || || Sbjct 1170739 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 1170680 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 1170679 GATGCCCTCCTTGTCCTGGATCTT 1170656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723926900607