Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1153 109 5e-19
seq566 100 2e-16
seq424 84.2 2e-11
>seq1153
Length=1501042
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||| |||||| | || || || || ||||| ||
Sbjct 1169370 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1169429
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 1169430 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 1169489
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | || || | ||||||||||| ||||||| | ||| | || || |||||
Sbjct 1169490 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1169549
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| || |||||||| || | || |||| |||| ||| |||| ||
Sbjct 1169550 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGCTTGAGGGGGGG 1169597
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
|||||||||| || || || || |||| |||||| | || || || || ||||| ||
Sbjct 1168913 CCATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCA 1168972
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
||| | ||||||| |||||| || || || || ||||| ||||| || || || |
Sbjct 1168973 GTGACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACC 1169032
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
| ||| | || || | ||||||||||| ||||||| | ||| | || || ||||
Sbjct 1169033 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 1169092
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || |||||||| || | || |||| | || | |||| |||||
Sbjct 1169093 ACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGGGGGGGCAT 1169144
>seq566
Length=2972453
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||||||||||| | || || || || ||||| ||
Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || ||||||||||| || || || ||
Sbjct 801179 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 801120
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || |||| || | || |||| |||||||||
Sbjct 801119 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 801060
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || || ||||| || | ||| ||||| | ||| || ||||||||
Sbjct 801059 ATCCAGAAAGAGTCCACTCTCCATCTGGTTCTTCGTCTGAGGGGTGGC 801012
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||||||||||| | || || || || ||||| ||
Sbjct 801467 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801408
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || || ||||| || || || ||
Sbjct 801407 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 801348
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || |||| || | || |||| |||||||||
Sbjct 801347 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 801288
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||||||| | || |||| ||||| || ||||||| ||
Sbjct 801287 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGGTAT 801238
>seq424
Length=11562000
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/200 (70%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| || | | || |||||| | || || ||||| || || |
Sbjct 7321798 ATGCAGATATTTGTGAAGA--CGGATGGGCAAGACCATCACCCTTGACGTTGAGACCAAT 7321855
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| ||||||| ||||| |||||||| || ||||| || | || |||
Sbjct 7321856 GATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCAA 7321915
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
| |||| | || | | |||||||| |||| ||| | || | || || |||||
Sbjct 7321916 CGGCGTCTGATTTGTGTGGGCAAACAGCTGGAGGACGGCCACACTTTCTCAGACTACAAT 7321975
Query 27168 ATTCAAAAGGAGTCGACCTT 27187
|| || || ||||| |||||
Sbjct 7321976 ATCCAGAAAGAGTCCACCTT 7321995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434910359446080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |