Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1033 212 5e-50 seq1407 181 9e-41 seq578 159 3e-34 seq1074 122 7e-23 seq694 98.7 8e-16 seq489 96.9 3e-15 >seq1033 Length=8840225 Score = 212 bits (234), Expect = 5e-50 Identities = 385/556 (69%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||| |||| || | || |||||||| || || || || | ||||| Sbjct 4779064 CTAAACTGTATCATCACTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 4779123 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| || |||| |||| |||||| | | || || | Sbjct 4779124 TGGCCGCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 4779183 Query 2257 -GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || |||| |||||| | || |||||||| || ||||||||||| || |||||| || Sbjct 4779184 GGAGGTAAA-CAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAA 4779242 Query 2316 -AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACA-CCTTAAAGAGCCA 2373 || || ||||| || ||||||| ||| | |||||||||||| | ||| | || || Sbjct 4779243 GAATCAA-CCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACCTCCAGGAACCT 4779301 Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA 2433 |||| || |||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 4779302 CCACAAGGAACTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAA 4779361 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 ||||||||| | | | |||||| | | ||||| || | || || || ||||| ||| || Sbjct 4779362 CCAGAATTAGCACATAAGGTGGACATGGTTTGGGTAGTGGGAGGCAGTTCTGTTTATAAG 4779421 Query 2494 GAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 || ||| | || | || | | | || || | |||||| || |||| ||||| Sbjct 4779422 GAAGCCATGAACAGGCCAGGCCATCTTAGACTACTTGTGACAAGGCTTATGCAGGAATTT 4779481 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| |||| || |||||| || || | ||||| |||| || | |||| Sbjct 4779482 GAAAGTGACACATTTTTTCCAGAAGTTGATTTGGAGAAATATAAACTTCTCCCAGAATAC 4779541 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| |||| | || || || || || || | ||||||||||| ||||| Sbjct 4779542 CCAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATCAAGTACAAATTTGAAGTATAT 4779601 Query 2674 GaaaaaaaaaCATAAT 2689 || || || | |||| Sbjct 4779602 GAGAAGAACAATTAAT 4779617 >seq1407 Length=12655370 Score = 181 bits (200), Expect = 9e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || ||||||||||||||||| ||| Sbjct 7010585 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAAAACATGGTCACC 7010644 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || ||||| || Sbjct 7010645 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 7010704 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || || |||||||| || || |||| ||||||||| Sbjct 7010705 CAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTGGAGGATGAAGGG 7010764 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| || |||||||| ||||||| || || || Sbjct 7010765 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 7010824 Query 1521 ACCCT 1525 ||||| Sbjct 7010825 ACCCT 7010829 >seq578 Length=7006945 Score = 159 bits (176), Expect = 3e-34 Identities = 376/556 (68%), Gaps = 19/556 (3%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| || || || | || |||||||| | || || || ||| Sbjct 5992517 CTAAACTGCATTGTCGCGGTGTCCCAGAACATGGGCATCTGCAAGAACGGGGGCGTGCTG 5992458 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254 | ||| || || | |||||||| || || |||| |||| |||||| | |||||| Sbjct 5992457 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCAAAGAATGACCACATCTTCCT 5992398 Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 | || || || ||| | || |||||||| || | ||||||||| || |||||| Sbjct 5992397 CATAGAACGTAAGCAAAATTTAGTGATTATGGGTAGGACGACATGGTTCTCTATTCCCAA 5992338 Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 || || ||| ||||| || || ||||| ||| | ||||||||| || |||||||||| Sbjct 5992337 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 5992279 Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTAT--A 2427 || || | | ||||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 5992278 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAAGTTATTGA 5992219 Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTC 2487 || | |||||| | | | ||||| | | |||||||| | || || || ||||| Sbjct 5992218 GTA--ATTGGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTT 5992161 Query 2488 TATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA 2547 ||| |||| | || | | | | || | | | || ||| | ||||||||| |||| Sbjct 5992160 TATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGCAG 5992101 Query 2548 AAATTTGAATGTGATACATACTTC--CCAGAAATTAATCTTACCAAATACAAACAACTTA 2605 |||||||| |||| ||||||| ||||| || || | | ||| |||| | Sbjct 5992100 GAATTTGAAAGTGA--CATACTTTTTCCAGACTTTGATTTGGAGAGATATAAACTTCCCC 5992043 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665 | | || |||||| ||| |||| || || || || || || ||| |||||||||| Sbjct 5992042 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTG 5991983 Query 2666 AGATATATGaaaaaaa 2681 | |||||| ||| || Sbjct 5991982 AAGTATATGCAAAGAA 5991967 >seq1074 Length=2765648 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || ||||||||| | ||||| || ||||||||| Sbjct 2709208 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2709267 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| ||| || | |||| || |||||| Sbjct 2709268 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 2709327 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2709328 ATCGCCCTGTGGATGACTGA 2709347 >seq694 Length=2958536 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| |||||| ||| ||| || | ||| ||||| || | |||||| Sbjct 60157 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 60098 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 ||||| |||| || | || ||||| ||| | ||| |||| || | || ||| Sbjct 60097 ATGAAGTCACTGGGCTTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAG 60038 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 |||| ||||| | || ||| |||| ||||||||| |||| ||| |||| | ||||| Sbjct 60037 CTGGTGACATTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAGCTGGCAG 59978 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || ||| | | || ||||| Sbjct 59977 GACAGCTCACCATTTTCCAGGTAGAACTG 59949 >seq489 Length=2104609 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || |||||||| || | || ||||||||| | || || || Sbjct 942549 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 942608 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| |||| ||||||||||| ||||| || || || ||||| | Sbjct 942609 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 942668 Query 118654 ACATAAAACTG 118664 || || ||||| Sbjct 942669 ACGTAGAACTG 942679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469328926156