Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq1033 212 5e-50
seq1407 181 9e-41
seq578 159 3e-34
seq1074 122 7e-23
seq694 98.7 8e-16
seq489 96.9 3e-15
>seq1033
Length=8840225
Score = 212 bits (234), Expect = 5e-50
Identities = 385/556 (69%), Gaps = 8/556 (1%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
||||||||||| |||| || | || |||||||| || || || || | |||||
Sbjct 4779064 CTAAACTGTATCATCACTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 4779123
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256
||||| || || | |||||||| || |||| |||| |||||| | | || || |
Sbjct 4779124 TGGCCGCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 4779183
Query 2257 -GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315
|| |||| |||||| | || |||||||| || ||||||||||| || |||||| ||
Sbjct 4779184 GGAGGTAAA-CAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAA 4779242
Query 2316 -AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACA-CCTTAAAGAGCCA 2373
|| || ||||| || ||||||| ||| | |||||||||||| | ||| | || ||
Sbjct 4779243 GAATCAA-CCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACCTCCAGGAACCT 4779301
Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA 2433
|||| || |||| ||| |||| |||||| | ||| | || | || |||| |
Sbjct 4779302 CCACAAGGAACTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAA 4779361
Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493
||||||||| | | | |||||| | | ||||| || | || || || ||||| ||| ||
Sbjct 4779362 CCAGAATTAGCACATAAGGTGGACATGGTTTGGGTAGTGGGAGGCAGTTCTGTTTATAAG 4779421
Query 2494 GAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553
|| ||| | || | || | | | || || | |||||| || |||| |||||
Sbjct 4779422 GAAGCCATGAACAGGCCAGGCCATCTTAGACTACTTGTGACAAGGCTTATGCAGGAATTT 4779481
Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613
||| |||| |||| || |||||| || || | ||||| |||| || | ||||
Sbjct 4779482 GAAAGTGACACATTTTTTCCAGAAGTTGATTTGGAGAAATATAAACTTCTCCCAGAATAC 4779541
Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673
|||||||||| |||| | || || || || || || | ||||||||||| |||||
Sbjct 4779542 CCAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATCAAGTACAAATTTGAAGTATAT 4779601
Query 2674 GaaaaaaaaaCATAAT 2689
|| || || | ||||
Sbjct 4779602 GAGAAGAACAATTAAT 4779617
>seq1407
Length=12655370
Score = 181 bits (200), Expect = 9e-41
Identities = 187/245 (76%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||| | || || ||||||||||||||||| |||
Sbjct 7010585 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAAAACATGGTCACC 7010644
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| |||||||| || ||||| || || || || || || ||||| ||
Sbjct 7010645 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 7010704
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || || |||||||| || || |||| |||||||||
Sbjct 7010705 CAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTGGAGGATGAAGGG 7010764
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||||||| | || || |||||||| || |||||||| ||||||| || || ||
Sbjct 7010765 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 7010824
Query 1521 ACCCT 1525
|||||
Sbjct 7010825 ACCCT 7010829
>seq578
Length=7006945
Score = 159 bits (176), Expect = 3e-34
Identities = 376/556 (68%), Gaps = 19/556 (3%)
Strand=Plus/Minus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| |||| || || || | || |||||||| | || || || |||
Sbjct 5992517 CTAAACTGCATTGTCGCGGTGTCCCAGAACATGGGCATCTGCAAGAACGGGGGCGTGCTG 5992458
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254
| ||| || || | |||||||| || || |||| |||| |||||| | ||||||
Sbjct 5992457 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCAAAGAATGACCACATCTTCCT 5992398
Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312
| || || || ||| | || |||||||| || | ||||||||| || ||||||
Sbjct 5992397 CATAGAACGTAAGCAAAATTTAGTGATTATGGGTAGGACGACATGGTTCTCTATTCCCAA 5992338
Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370
|| || ||| ||||| || || ||||| ||| | ||||||||| || ||||||||||
Sbjct 5992337 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 5992279
Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTAT--A 2427
|| || | | ||||| ||| |||| |||||| | ||| | || | || |||| |
Sbjct 5992278 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAAGTTATTGA 5992219
Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTC 2487
|| | |||||| | | | ||||| | | |||||||| | || || || |||||
Sbjct 5992218 GTA--ATTGGAATTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTT 5992161
Query 2488 TATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA 2547
||| |||| | || | | | | || | | | || ||| | ||||||||| ||||
Sbjct 5992160 TATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGCAG 5992101
Query 2548 AAATTTGAATGTGATACATACTTC--CCAGAAATTAATCTTACCAAATACAAACAACTTA 2605
|||||||| |||| ||||||| ||||| || || | | ||| |||| |
Sbjct 5992100 GAATTTGAAAGTGA--CATACTTTTTCCAGACTTTGATTTGGAGAGATATAAACTTCCCC 5992043
Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665
| | || |||||| ||| |||| || || || || || || ||| ||||||||||
Sbjct 5992042 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTG 5991983
Query 2666 AGATATATGaaaaaaa 2681
| |||||| ||| ||
Sbjct 5991982 AAGTATATGCAAAGAA 5991967
>seq1074
Length=2765648
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | ||||| || ||||||||| | ||||| || |||||||||
Sbjct 2709208 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2709267
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| ||| || | |||| || ||||||
Sbjct 2709268 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 2709327
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 2709328 ATCGCCCTGTGGATGACTGA 2709347
>seq694
Length=2958536
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | |||||| |||||| ||| ||| || | ||| ||||| || | ||||||
Sbjct 60157 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 60098
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
||||| |||| || | || ||||| ||| | ||| |||| || | || |||
Sbjct 60097 ATGAAGTCACTGGGCTTCAGGCCTGTGGTGTGTACCATCCTGTAGGTGAGCAGGGCATAG 60038
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
|||| ||||| | || ||| |||| ||||||||| |||| ||| |||| | |||||
Sbjct 60037 CTGGTGACATTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTATAGCTGGCAG 59978
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664
|| ||||| || ||| | | || |||||
Sbjct 59977 GACAGCTCACCATTTTCCAGGTAGAACTG 59949
>seq489
Length=2104609
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||| || |||||||| || | || ||||||||| | || || ||
Sbjct 942549 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 942608
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|||||||| ||||||||| |||| ||||||||||| ||||| || || || ||||| |
Sbjct 942609 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 942668
Query 118654 ACATAAAACTG 118664
|| || |||||
Sbjct 942669 ACGTAGAACTG 942679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414469328926156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |