Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1153 98.7 9e-16
seq566 87.8 2e-12
seq424 82.4 7e-11
>seq1153
Length=1501042
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || || ||||| | |||| || || ||| ||| || || || || || || |
Sbjct 1169597 CCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169538
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||||||||| ||||| || | | ||||||||| | |||
Sbjct 1169537 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169478
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| || ||| |||||| ||| ||| |||| || | | || || || | ||||||
Sbjct 1169477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1169418
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| | || |||||||| || || || ||||| |||||
Sbjct 1169417 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || || | ||| | |||| || || ||| ||| || || || || || ||
Sbjct 1169145 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1169086
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
| || || || | || || ||||||||||| ||||| || | | ||||||||| |
Sbjct 1169085 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 1169026
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233
||| | || |||||| ||| ||| ||| ||||| || | | || || || | |||
Sbjct 1169025 GGGGATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTC 1168966
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| | || ||||||| || || || ||||| |||||
Sbjct 1168965 CACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915
>seq566
Length=2972453
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
|||||| || || || ||||| | ||| || || | || || ||||| ||||| |||||
Sbjct 801276 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 801335
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || | ||||||||| | ||| | || ||| || ||| ||| || || | |
Sbjct 801336 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTT 801395
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | || || || | |||||| |||| ||||| | || || ||||| || || ||
Sbjct 801396 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 801455
Query 39273 AAAGATTTGCATCTTTAC 39290
||||||||||| || ||
Sbjct 801456 GAAGATTTGCATTTTGAC 801473
>seq424
Length=11562000
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGC--AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCA 39150
|||||| || ||||| || || | |||||| | |||| || |||||||||||| ||
Sbjct 7321987 CTCTTTCTGGATATTGTAGTCTGAGAAAGTGT--GGCCGTCCTCCAGCTGTTTGCCCACA 7321930
Query 39151 AATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGC 39210
| || |||||| | ||||| || | || ||| ||||| |||||| ||||| |
Sbjct 7321929 CAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACC 7321870
Query 39211 GTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270
|| ||| ||||| | | ||| ||||| | ||||| | || ||| || ||| ||
Sbjct 7321869 TTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTCTTC 7321812
Query 39271 ACAAAGATTTGCATC 39285
||||| || ||||||
Sbjct 7321811 ACAAATATCTGCATC 7321797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429537857306327
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |