Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1153 98.7 9e-16 seq566 87.8 2e-12 seq424 82.4 7e-11 >seq1153 Length=1501042 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || ||||| | |||| || || ||| ||| || || || || || || | Sbjct 1169597 CCCCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1169538 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || | | ||||||||| | ||| Sbjct 1169537 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 1169478 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| ||| |||| || | | || || || | |||||| Sbjct 1169477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 1169418 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || |||||||| || || || ||||| ||||| Sbjct 1169417 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | |||| || || ||| ||| || || || || || || Sbjct 1169145 CATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1169086 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || || ||||||||||| ||||| || | | ||||||||| | Sbjct 1169085 AGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 1169026 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || |||||| ||| ||| ||| ||||| || | | || || || | ||| Sbjct 1169025 GGGGATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTC 1168966 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || ||||||| || || || ||||| ||||| Sbjct 1168965 CACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 >seq566 Length=2972453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 801276 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 801335 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || ||| || ||| ||| || || | | Sbjct 801336 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTT 801395 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || || | |||||| |||| ||||| | || || ||||| || || || Sbjct 801396 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 801455 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 801456 GAAGATTTGCATTTTGAC 801473 >seq424 Length=11562000 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGC--AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCA 39150 |||||| || ||||| || || | |||||| | |||| || |||||||||||| || Sbjct 7321987 CTCTTTCTGGATATTGTAGTCTGAGAAAGTGT--GGCCGTCCTCCAGCTGTTTGCCCACA 7321930 Query 39151 AATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGC 39210 | || |||||| | ||||| || | || ||| ||||| |||||| ||||| | Sbjct 7321929 CAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACC 7321870 Query 39211 GTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 || ||| ||||| | | ||| ||||| | ||||| | || ||| || ||| || Sbjct 7321869 TTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--CGTCTTC 7321812 Query 39271 ACAAAGATTTGCATC 39285 ||||| || |||||| Sbjct 7321811 ACAAATATCTGCATC 7321797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537857306327