Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1477 104 2e-17 seq1153 95.1 8e-15 seq566 91.5 1e-13 >seq1477 Length=8748460 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| | ||| || |||||||| || ||||| || |||| | | || || || || Sbjct 7843998 AAGATGCAAAATTTTGTGAAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTCGAACCC 7843939 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | |||| ||| ||| | || | | | || || |||| | || || | Sbjct 7843938 TCGGATACAATAGAAAGTATGAAAGCCAAGATTCGG-GATAAGGAAGAAATTCCTCCTTA 7843880 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| |||| || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 7843879 TCAGCAGAGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 7843820 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 7843819 CAACATTCAGAAGGAGTCCAC 7843799 >seq1153 Length=1501042 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || ||||| || || || || ||| Sbjct 1168915 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1168974 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || ||||| || | || || || || Sbjct 1168975 GACACCATTGAGAATGTCAAAGGGAAGATCCAGGAAAAAGAGGGCATCCCCCCTGACCAG 1169034 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| | || |||||| Sbjct 1169035 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169094 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1169095 ATCCAGAAGGAGTCCAC 1169111 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 1169371 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1169430 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 1169431 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1169490 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| | || |||||| Sbjct 1169491 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1169550 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1169551 ATCCAGAAGGAGTCCAC 1169567 >seq566 Length=2972453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 801239 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 801180 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || |||||||| | || || || || Sbjct 801179 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAG 801120 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || ||||| || | |||||| | ||||||||| Sbjct 801119 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 801060 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| | ||| | ||| Sbjct 801059 ATCCAGAAAGAGTCCACTCTCCATCTGGTT 801030 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || || Sbjct 801470 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 801411 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || || || || | || ||||| Sbjct 801410 AGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGAC 801351 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || ||||| || | |||||| | |||||| Sbjct 801350 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTAC 801291 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 801290 AACATCCAGAAAGAGTCGAC 801271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003507271332