Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1153 145 2e-29
seq566 138 3e-27
seq648 116 9e-21
seq623 109 1e-18
seq536 100 7e-16
seq1479 98.7 2e-15
seq559 91.5 4e-13
seq985 87.8 4e-12
seq424 87.8 4e-12
>seq1153
Length=1501042
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| |||||||||||||| || || |||| ||||| || | || || | ||||||
Sbjct 1171012 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1170953
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1170952 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1170893
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||
Sbjct 1170892 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1170833
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||||| || || | ||| | |||||
Sbjct 1170832 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| |||||||||||||| || || |||| ||||| || | || || | ||||||
Sbjct 1169583 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1169524
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| || || || ||||| | | || ||||| || || || || ||||||||
Sbjct 1169523 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1169464
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| || ||||||||||| || ||||| || | ||||| ||
Sbjct 1169463 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1169404
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || || | ||| | |||||
Sbjct 1169403 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| |||||||| || || |||| ||||| || | || || | |||||||
Sbjct 1169354 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169295
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1169294 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1169235
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || ||||| || | ||||| |||
Sbjct 1169234 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1169175
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||| || || | ||| | |||||
Sbjct 1169174 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| |||||||| || || |||| ||||| || | || || | |||||||
Sbjct 1169126 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169067
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || || ||||| | | || ||||| || || || || || || ||
Sbjct 1169066 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCC 1169007
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| || ||| || |||||||| || ||||| || | ||||| |||
Sbjct 1169006 TGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1168947
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || || | ||| | |||||
Sbjct 1168946 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915
Score = 102 bits (112), Expect = 2e-16
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| |||||||| || || |||| ||||| || | || || | |||||||
Sbjct 1170783 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1170724
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| ||||| || ||||| | | || ||||| || || || || ||||||||
Sbjct 1170723 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1170664
Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTC 225653
|||||||| ||| | || | |||||||||||
Sbjct 1170663 TGGATCTTCGCCTTGA-AGTTCTCGATGGTGTC 1170632
>seq566
Length=2972453
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||
Sbjct 801255 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 801314
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| |||||||| || || ||||| || | || ||||| || || || || ||||| ||
Sbjct 801315 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 801374
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| |||||| |||||||||||| || ||||| || | ||||| ||
Sbjct 801375 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 801434
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||| |||| || || | ||| | |||||||||
Sbjct 801435 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 801470
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || ||||||||||| ||||| |||| |||||||| | | ||| | |||||
Sbjct 801028 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 801087
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || | || ||||| || || || ||||| || ||
Sbjct 801088 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 801147
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| |||||||||||| || ||||| || | ||||| |||
Sbjct 801148 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 801207
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 801208 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239
>seq648
Length=20061788
Score = 116 bits (128), Expect = 9e-21
Identities = 161/225 (72%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|| |||||||| ||||| || ||| |||| | ||||| | |||||||| |||||
Sbjct 17362387 ACCAAGTCTCAACACAAGATGAAGAATGGACTACTTTTGAATGTTGTAATC----AAAGT 17362442
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| | |||||| || ||||| ||||| ||||| |||| || || || | ||||| ||
Sbjct 17362443 ACATCTATCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCC 17362502
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| ||||||||||| ||| ||| ||| || | || ||| ||| | || |
Sbjct 17362503 TTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCA 17362562
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||| ||| | |||||||| ||| | | ||||| ||
Sbjct 17362563 AGTGATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCATCTT 17362607
>seq623
Length=19124984
Score = 109 bits (120), Expect = 1e-18
Identities = 127/170 (75%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGT-TATGATTTTCTTTTTTGTTATGCCG 7614
|||| || || || | || || ||||||||||| || ||||||||| | || || ||
Sbjct 12848915 TTTATAATGTGGTTGTCACTGCCCATGCCTTTGTAAATAATTTTCTTTATGGTGATACCC 12848856
Query 7615 GTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATG 7674
||||||| || || |||||||| ||||| || || ||||| ||||| || || || |||
Sbjct 12848855 ATTATGATTGGAGGATTCGGAAACTGATTGGTACCATTAATAATTGGGGCACCCGACATG 12848796
Query 7675 GCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|| || || || | || ||||||| ||| ||| | || || || |||||
Sbjct 12848795 GCATTCCCTCGGATAAATAATATAAATTTCTGACTTCTGCCTCCATCCTT 12848746
>seq536
Length=25944906
Score = 100 bits (110), Expect = 7e-16
Identities = 148/209 (71%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|||| || ||||| ||||||||||| || ||||| | ||||| | |||||| |
Sbjct 23770643 AGTCCCAACACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTA----GTCAAAGTACAT 23770588
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| || ||||| ||||| ||||| ||| || || || || || ||||
Sbjct 23770587 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGA----GTTCC 23770532
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|| || || ||||| ||||||| ||| || || | ||| | ||| || || | |||
Sbjct 23770531 TTATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTG 23770472
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| ||||| ||| | | |||||| | |||
Sbjct 23770471 ATGGTCTTCCCCATAAGAGTTTTCACGAA 23770443
>seq1479
Length=16990
Score = 98.7 bits (108), Expect = 2e-15
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||| || || | |||| || ||||||||||| || || || ||| | || ||
Sbjct 6432 CCAAATTTATAATGTAGTAGTTACTGCCCATGCCTTTGTGATAATCTTTTTTATAGTAAT 6491
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
||| |||| || || || |||||||| || | ||||| ||||| || || || || ||
Sbjct 6492 GCCTATTATAATTGGAGGATTCGGAAACTGGCTAGTTCCGTTAATAATCGGAGCCCCCGA 6551
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|||||| || || | | || || ||||| || ||| | || || || |||||
Sbjct 6552 TATGGCATTCCCTCGAATGAATAACATAAGCTTCTGACTCCTTCCCCCATCCTT 6605
>seq559
Length=16120974
Score = 91.5 bits (100), Expect = 4e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|||| || |||||||| || || || |||||||| || || |||||||| ||||||||
Sbjct 14441915 AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACCA 14441856
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
||||||||||| | || ||||| || || | || ||||| ||||||
Sbjct 14441855 GCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCGCCAAAA 14441808
>seq985
Length=520446
Score = 87.8 bits (96), Expect = 4e-12
Identities = 155/225 (69%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||| ||||| ||||| || ||||||| | ||||| | ||||| || |||||
Sbjct 283224 ACGAAATCTCAACACAAGATGAAGAGTGGGCTACTTTTGAATGTTGTAGTC----AAAGT 283169
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| || ||||| |||| ||||| |||| || | | | |||| ||
Sbjct 283168 ACATCCATCTTCCAGTTGCTTGCCAGTGAAGAGCAGTCTCTGACGACCAAGAGGAAGTCC 283109
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| | ||||||||||| ||| ||| ||| || || || |||| ||| | || |
Sbjct 283108 TT---TATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAATCTCGAG 283052
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||| ||| |||||||| ||| | | ||||| ||
Sbjct 283051 AGTGATAATCTTCCCCAAAAAAGTTTTCATGGAAATCTGCATCTT 283007
>seq424
Length=11562000
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||| | ||||| ||||| |||| |||||| || | ||||| || ||
Sbjct 7322007 AGGACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCC 7321948
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || | | || || || ||||||| |||| || || |||||||||
Sbjct 7321947 TCCAGCTGTTTGCCCACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCT 7321888
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||| ||| || || || || ||||| || ||| || ||||| | ||||| ||
Sbjct 7321887 TGGAT-TTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGT 7321829
Query 225681 CTTGCCCGTC 225690
||||||| ||
Sbjct 7321828 CTTGCCCATC 7321819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192508601906426
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