Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1153 145 2e-29 seq566 138 3e-27 seq648 116 9e-21 seq623 109 1e-18 seq536 100 7e-16 seq1479 98.7 2e-15 seq559 91.5 4e-13 seq985 87.8 4e-12 seq424 87.8 4e-12 >seq1153 Length=1501042 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| || || |||| ||||| || | || || | |||||| Sbjct 1171012 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1170953 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1170952 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1170893 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 1170892 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1170833 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||| || || | ||| | ||||| Sbjct 1170832 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| || || |||| ||||| || | || || | |||||| Sbjct 1169583 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1169524 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || || ||||| | | || ||||| || || || || |||||||| Sbjct 1169523 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1169464 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 1169463 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1169404 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 1169403 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || || | ||||||| Sbjct 1169354 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169295 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1169294 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1169235 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 1169234 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1169175 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 1169174 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || || | ||||||| Sbjct 1169126 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169067 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | | || ||||| || || || || || || || Sbjct 1169066 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCC 1169007 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| || |||||||| || ||||| || | ||||| ||| Sbjct 1169006 TGGATCTTCCCTTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1168947 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 1168946 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 Score = 102 bits (112), Expect = 2e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || || | ||||||| Sbjct 1170783 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1170724 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 1170723 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1170664 Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTC 225653 |||||||| ||| | || | ||||||||||| Sbjct 1170663 TGGATCTTCGCCTTGA-AGTTCTCGATGGTGTC 1170632 >seq566 Length=2972453 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || ||||| |||| |||||||| | | ||| | ||||| Sbjct 801255 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 801314 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 801315 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 801374 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| |||||||||||| || ||||| || | ||||| || Sbjct 801375 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 801434 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | ||||||||| Sbjct 801435 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 801470 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||||||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 801028 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 801087 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || ||||| || || Sbjct 801088 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 801147 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||||||| || ||||| || | ||||| ||| Sbjct 801148 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 801207 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 801208 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 >seq648 Length=20061788 Score = 116 bits (128), Expect = 9e-21 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||||||| ||||| || ||| |||| | ||||| | |||||||| ||||| Sbjct 17362387 ACCAAGTCTCAACACAAGATGAAGAATGGACTACTTTTGAATGTTGTAATC----AAAGT 17362442 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | | |||||| || ||||| ||||| ||||| |||| || || || | ||||| || Sbjct 17362443 ACATCTATCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCC 17362502 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| ||| ||| || | || ||| ||| | || | Sbjct 17362503 TTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGCA 17362562 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| | |||||||| ||| | | ||||| || Sbjct 17362563 AGTGATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCATCTT 17362607 >seq623 Length=19124984 Score = 109 bits (120), Expect = 1e-18 Identities = 127/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGT-TATGATTTTCTTTTTTGTTATGCCG 7614 |||| || || || | || || ||||||||||| || ||||||||| | || || || Sbjct 12848915 TTTATAATGTGGTTGTCACTGCCCATGCCTTTGTAAATAATTTTCTTTATGGTGATACCC 12848856 Query 7615 GTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATG 7674 ||||||| || || |||||||| ||||| || || ||||| ||||| || || || ||| Sbjct 12848855 ATTATGATTGGAGGATTCGGAAACTGATTGGTACCATTAATAATTGGGGCACCCGACATG 12848796 Query 7675 GCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || || | || ||||||| ||| ||| | || || || ||||| Sbjct 12848795 GCATTCCCTCGGATAAATAATATAAATTTCTGACTTCTGCCTCCATCCTT 12848746 >seq536 Length=25944906 Score = 100 bits (110), Expect = 7e-16 Identities = 148/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || ||||| ||||||||||| || ||||| | ||||| | |||||| | Sbjct 23770643 AGTCCCAACACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTA----GTCAAAGTACAT 23770588 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| ||||| ||||| ||| || || || || || |||| Sbjct 23770587 CCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGA----GTTCC 23770532 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || || ||||| ||||||| ||| || || | ||| | ||| || || | ||| Sbjct 23770531 TTATCCTGAATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTG 23770472 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| ||| | | |||||| | ||| Sbjct 23770471 ATGGTCTTCCCCATAAGAGTTTTCACGAA 23770443 >seq1479 Length=16990 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || | |||| || ||||||||||| || || || ||| | || || Sbjct 6432 CCAAATTTATAATGTAGTAGTTACTGCCCATGCCTTTGTGATAATCTTTTTTATAGTAAT 6491 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || || |||||||| || | ||||| ||||| || || || || || Sbjct 6492 GCCTATTATAATTGGAGGATTCGGAAACTGGCTAGTTCCGTTAATAATCGGAGCCCCCGA 6551 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 |||||| || || | | || || ||||| || ||| | || || || ||||| Sbjct 6552 TATGGCATTCCCTCGAATGAATAACATAAGCTTCTGACTCCTTCCCCCATCCTT 6605 >seq559 Length=16120974 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || |||||||| || || || |||||||| || || |||||||| |||||||| Sbjct 14441915 AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACCA 14441856 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| || || | || ||||| |||||| Sbjct 14441855 GCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCGCCAAAA 14441808 >seq985 Length=520446 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||| ||||| ||||| || ||||||| | ||||| | ||||| || ||||| Sbjct 283224 ACGAAATCTCAACACAAGATGAAGAGTGGGCTACTTTTGAATGTTGTAGTC----AAAGT 283169 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| |||| ||||| |||| || | | | |||| || Sbjct 283168 ACATCCATCTTCCAGTTGCTTGCCAGTGAAGAGCAGTCTCTGACGACCAAGAGGAAGTCC 283109 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || | ||||||||||| ||| ||| ||| || || || |||| ||| | || | Sbjct 283108 TT---TATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAATCTCGAG 283052 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| |||||||| ||| | | ||||| || Sbjct 283051 AGTGATAATCTTCCCCAAAAAAGTTTTCATGGAAATCTGCATCTT 283007 >seq424 Length=11562000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||| | ||||| ||||| |||| |||||| || | ||||| || || Sbjct 7322007 AGGACCAGGTTCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAGAAAGTGTGGCCGTCC 7321948 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || | | || || || ||||||| |||| || || ||||||||| Sbjct 7321947 TCCAGCTGTTTGCCCACACAAATCAGACGCCGTTGGTCAAGCGGGATGCCCTCCTTGTCT 7321888 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || || ||||| || ||| || ||||| | ||||| || Sbjct 7321887 TGGAT-TTTGGCTTTGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGT 7321829 Query 225681 CTTGCCCGTC 225690 ||||||| || Sbjct 7321828 CTTGCCCATC 7321819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192508601906426