Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq489 163 2e-35 seq1033 95.1 1e-14 seq550 87.8 1e-12 >seq489 Length=2104609 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| |||||| Sbjct 942549 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 942608 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| | |||||| || || || |||| | Sbjct 942609 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAACTGGCAGGACAGTTCACCGTTCACC 942668 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||| |||||||| ||| Sbjct 942669 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGTAGGGCCATCAGA 942713 >seq1033 Length=8840225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || || ||||| |||| || | ||||| | | |||| |||||| | ||| || ||| Sbjct 4779287 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAG 4779228 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409 ||||| ||||| |||||||| ||||||| ||||| ||||||| | || || || | | Sbjct 4779227 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTCCTACTGATGAGGTTGTG 4779168 Query 114410 GTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCT 114469 |||| | | || | || || || || | || ||| |||| ||||| || Sbjct 4779167 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTCC 4779114 Query 114470 CCGTTGTTCCCGATGCCCATG-TCT-GGACACGCTGCCACGATACCGTTCAG 114519 || || || |||||||||||| ||| |||||| || | ||||| ||| || Sbjct 4779113 CCATTCTTGCCGATGCCCATGTTCTGGGACACAGTG--ATGATACAGTTTAG 4779064 >seq550 Length=32697773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 9736947 TTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9736888 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 9736887 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 9736840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406155878781394