Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq515 114 1e-20
seq485 96.9 3e-15
seq1344 86.0 5e-12
>seq515
Length=2727018
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| || || ||||| || ||||| || || | |||| |||||||| ||| || ||||
Sbjct 2713393 AGCCCTTGTGAAAACGGACATTCAGATAGCTCTTTCTTCTGGGTGCTATGGAAGAGTAGC 2713334
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | ||||| ||||| | |||||||| || || || | || || || ||||||
Sbjct 2713333 TCCCCGTTCTGGCTTGGCTGCGAAACACTTCATAGATGTAAGAGCTGGCGTCATAGATGA 2713274
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| || || ||||| | ||||||||||| |||||| | | ||
Sbjct 2713273 AGATTATAGAGGAAATGTGGGTGTTGTGCTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 2713215
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTT 31976
| |||||||| ||| | | || || || ||||
Sbjct 2713214 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTT 2713182
>seq485
Length=11789088
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||||| | || || || |||||||| || || || ||||||||||||||||| || ||
Sbjct 152882 ACAAAAACCTT--ACCAAATTTTCGTTCACAATGCCATCACTGGCTGCAAAAAAGGCTAA 152939
Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038
| ||||| ||||| |||| || |||| ||||| || |||||||| || | ||| ||
Sbjct 152940 TATGTGAGAGATAAAATACTTCTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCTT 152999
Query 5039 AGTTAAATCAAC 5050
| ||| |||||
Sbjct 153000 TGATAAGTCAAC 153011
>seq1344
Length=6361600
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || |||||||| | || ||||| | || | || ||
Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | || || || ||||||||||| || ||||| || || ||||| ||
Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310
Query 4692 AC 4693
||
Sbjct 6043309 AC 6043308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427041902297507
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |