Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq515 114 1e-20 seq485 96.9 3e-15 seq1344 86.0 5e-12 >seq515 Length=2727018 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | |||| |||||||| ||| || |||| Sbjct 2713393 AGCCCTTGTGAAAACGGACATTCAGATAGCTCTTTCTTCTGGGTGCTATGGAAGAGTAGC 2713334 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| || || || | || || || |||||| Sbjct 2713333 TCCCCGTTCTGGCTTGGCTGCGAAACACTTCATAGATGTAAGAGCTGGCGTCATAGATGA 2713274 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| || || ||||| | ||||||||||| |||||| | | || Sbjct 2713273 AGATTATAGAGGAAATGTGGGTGTTGTGCTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 2713215 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTT 31976 | |||||||| ||| | | || || || |||| Sbjct 2713214 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTT 2713182 >seq485 Length=11789088 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || |||||||| || || || ||||||||||||||||| || || Sbjct 152882 ACAAAAACCTT--ACCAAATTTTCGTTCACAATGCCATCACTGGCTGCAAAAAAGGCTAA 152939 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| ||||| |||| || |||| ||||| || |||||||| || | ||| || Sbjct 152940 TATGTGAGAGATAAAATACTTCTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCTT 152999 Query 5039 AGTTAAATCAAC 5050 | ||| ||||| Sbjct 153000 TGATAAGTCAAC 153011 >seq1344 Length=6361600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | || || || ||||||||||| || ||||| || || ||||| || Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310 Query 4692 AC 4693 || Sbjct 6043309 AC 6043308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041902297507