Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq722 123 3e-23
seq1344 116 5e-21
seq515 107 3e-18
seq485 87.8 2e-12
>seq722
Length=1584642
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 1256639 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1256698
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||| ||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 1256699 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1256758
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 1256759 TTTCTTATACCAT 1256771
Score = 120 bits (132), Expect = 4e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| |||||
Sbjct 1273072 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1273131
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || |||||| || || | ||| | |||||||
Sbjct 1273132 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1273191
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|||||||| ||||||||| ||
Sbjct 1273192 ATATGCTGTGGTCTTTCAGCC 1273212
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || |||| || | |||
Sbjct 1266463 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1266522
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| ||
Sbjct 1266523 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1266582
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| ||||| || || | | ||||||||
Sbjct 1266583 TCCAGATAAATAGCAAATGCCCCAGGTCG 1266611
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| |||
Sbjct 1265779 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1265838
Query 77985 CAGTC 77989
|||||
Sbjct 1265839 CAGTC 1265843
>seq1344
Length=6361600
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| |||
Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGC 6043311
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/138 (76%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| |
Sbjct 6044941 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 6044882
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 6044881 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 6044822
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 6044821 CATAAAGTCAAATGGATT 6044804
>seq515
Length=2727018
Score = 107 bits (118), Expect = 3e-18
Identities = 242/355 (68%), Gaps = 19/355 (5%)
Strand=Plus/Plus
Query 45877 CCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCT 45934
||||| || ||||| ||| ||| | | |||||||| |||| | | || |||||||
Sbjct 2713097 CCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCAGTGTCATCCAAAACCTGAACTTCCT 2713154
Query 45935 TCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTA 45994
| || |||| | | || |||| ||| || || || || |||| ||||||| | || |
Sbjct 2713155 CTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCACCCTTTTTGA 2713214
Query 45995 TTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTT 46054
|||||| | ||||| ||| ||| | || | || || | | |||||||||||||
Sbjct 2713215 CTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCTCTATAATCTT 2713274
Query 46055 CATCTATTACTCCCCCTCCCACATCGAT--ACCTTTTAG-AGACAGTCCAGATCTAGGAG 46111
||||||| || || ||| ||||| || | ||| | || || ||||| | ||||
Sbjct 2713275 CATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCAGAACGGGGAG 2713334
Query 46112 CTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAAT 46167
||| ||||||||| ||||| | | || ||| |||| || ||||| | |||
Sbjct 2713335 CTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCGTTTTCA-CAA- 2713388
Query 46168 CTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220
|||| ||| ||| || | ||||| || || |||||||| | ||| || ||
Sbjct 2713389 GGGCTTTTTCCATAGGTGGTACTGTATAATCATAGGCACTGTACAGATCGTAGCC 2713443
>seq485
Length=11789088
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697
||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || |||
Sbjct 157411 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 157470
Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723
||| |||||||| || || |||||||
Sbjct 157471 GTACTGGATTGGAAAGATGACAAATC 157496
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
|||||| || | || |||||||| || ||||| ||||| |||||||| || || |||||
Sbjct 134178 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 134237
Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAA 47943
|||||||||||| ||||| |||| | | |||
Sbjct 134238 CATAAAATCAAAGGGATTTTCTGCCTGAAAAA 134269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694655957310560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |