Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq722 127 3e-24 seq1344 120 4e-22 seq485 109 8e-19 seq515 86.0 9e-12 >seq722 Length=1584642 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 1256639 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATGGAC 1256698 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 1256699 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1256758 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 1256759 TTTCTTATACCAT 1256771 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| ||||| Sbjct 1273072 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1273131 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || |||||| || |||| || | ||||||| Sbjct 1273132 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1273191 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 1273192 ATATGCTGTGGTCTTTC 1273208 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 1278592 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCTGCCAGGATG 1278651 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 1278652 GCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 1278711 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| || || || |||||||||| Sbjct 1278712 TCCACAGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCATGG 1278757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 1265779 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 1265838 Query 76580 CACTC 76584 || || Sbjct 1265839 CAGTC 1265843 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || | || | || || || || || || || || Sbjct 1262129 GAGCCCTCATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 1262188 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || || | ||| || || || ||||| |||| ||| Sbjct 1262189 GCTCCATAATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTGGGCTTCTGGACTCTCA 1262248 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | |||||||| |||||||| || || || || || || ||||| || Sbjct 1262249 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGG 1262308 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 1262309 CGATGGCGTTTATTTGA 1262325 >seq1344 Length=6361600 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || ||| Sbjct 6043429 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 6043370 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||||||||| ||||||||||| || ||||| || || || || || Sbjct 6043369 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 6043310 Query 46774 ACAAGTCTCTCTCC 46787 |||| | |||||| Sbjct 6043309 ACAACCCGCTCTCC 6043296 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | ||||||||||| || ||||| |||||||| || || Sbjct 6041436 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 6041377 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || ||||| ||||| | |||||||||||||| || ||| Sbjct 6041376 AATTTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 6041331 >seq485 Length=11789088 Score = 109 bits (120), Expect = 8e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 143825 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 143884 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 143885 TCAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 143944 Query 46772 CGACAAGTCT 46781 | || | ||| Sbjct 143945 CCACCACTCT 143954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| ||||||||||| ||||| || ||| | Sbjct 157411 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 157470 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 157471 GTACTGGATTGGAAAGATGACAAATC 157496 >seq515 Length=2727018 Score = 86.0 bits (94), Expect = 9e-12 Identities = 206/305 (68%), Gaps = 15/305 (5%) Strand=Plus/Plus Query 44412 TGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCA 44471 || |||||||||| || |||| | | || |||| ||| || || || || |||| |||| Sbjct 2713145 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCATAAATGAGCTGTGCAATTCGATCA 2713204 Query 44472 CCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCC 44531 || | || | || ||| | ||||| ||| ||| | | | || || | || || Sbjct 2713205 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGCACAACACCCACATTTCCT 2713264 Query 44532 CTATAATCTTCATCTATTACTCCACCTCCCACATCAAT--ACCTTTTAG-AGAAAGACCC 44588 ||||||||||||||||| || ||| ||| ||||| || | ||| | || | || Sbjct 2713265 CTATAATCTTCATCTATGACGCCAGCTCTTACATCTATGAAGTGTTTCGCAGCCAAGCCA 2713324 Query 44589 GATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTGT 44644 || | || |||| ||||||||| ||||| | | || || |||| || || Sbjct 2713325 GAACGGGGAGCTACTCTTCCATAGCACCCAGAA----GAAAGAGCTATCTGAATGTCCGT 2713380 Query 44645 TTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCA 44702 ||| | ||| | |||| ||| ||| || | |||||||| || |||||||| | ||| Sbjct 2713381 TTTCA-CAA-GGGCTTTTTCCATAGGTGGTACTGTATAATCATAGGCACTGTACAGATCG 2713438 Query 44703 TATCC 44707 || || Sbjct 2713439 TAGCC 2713443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921219625280