Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1153 141 2e-28 seq566 114 3e-20 seq738 86.0 1e-11 >seq1153 Length=1501042 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 1169136 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1169077 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || ||| ||||| ||||| | |||||||||||| | | ||| || Sbjct 1169076 GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCC 1169017 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 || ||||| || || || ||||||| |||| | | |||| ||| ||| || || Sbjct 1169016 CTCTTTTTCCTGGATCTTCCCTTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 1168960 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||||||||||| |||||| Sbjct 1168959 CAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1168915 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 1169364 CCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1169305 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 1169304 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCC 1169245 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || ||||| |||| | | |||| ||| ||| || || Sbjct 1169244 CTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 1169188 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || ||||||||||||| |||||| Sbjct 1169187 CAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169143 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| || | | || | ||||||| Sbjct 1171011 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1170952 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| | |||||||||||| | | ||| || ||||| || Sbjct 1170951 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1170892 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 1170891 TGGATCTTCGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 1170835 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| | ||||||||||||| |||||| Sbjct 1170834 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1170800 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| || | | || | ||||||| Sbjct 1169582 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1169523 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | |||||||||||| | | ||| || ||||| || Sbjct 1169522 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1169463 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 1169462 TGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 1169406 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || ||||||||||||| |||||| Sbjct 1169405 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1169371 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 1170792 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 1170733 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 1170732 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCC 1170673 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| || || || || Sbjct 1170672 TCCTTGTCCTGGATCTT 1170656 >seq566 Length=2972453 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| |||||||| |||||||||||||| | | ||| | ||||| Sbjct 801028 AGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 801087 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 801088 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 801147 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || | || | | |||| ||| ||| || || || || || Sbjct 801148 TGGATCTTGGCCTTCACGTTTTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 801204 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 801205 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 801239 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| |||||||||||||| | | ||| | ||||| Sbjct 801256 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCC 801315 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || ||||| || Sbjct 801316 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 801375 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || | || | | |||| ||| ||| || || || || || Sbjct 801376 TGGATCTTGGCCTTCACGTTTTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 801432 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| |||||||| Sbjct 801433 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 801470 >seq738 Length=7307337 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || || |||| ||| || ||||||| | | ||| | | ||| Sbjct 4320472 GAGAACCAGGTGCAGGGTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATC 4320413 Query 151952 TTCTAG--GCTTTTCCCGGCGAA-GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||| || ||||| || | || | | |||||||||||||| | |||| ||||| || Sbjct 4320412 TTCCAGCAGCTTTGCCTGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTT 4320353 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || || ||| ||| |||| | | |||| | ||| || || ||||| | Sbjct 4320352 ATCTTGGATCTTAGCTTTCACATTCTCAATGGTGTCAGTGGGCTCCACCTCCAGAGTGAC 4320293 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||| | || | |||||| Sbjct 4320292 GGTCTTGCCAGTCAGGGTCTTCGCAAACATCTGCAT 4320257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153798935456409