Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1085 174 2e-38 >seq1085 Length=18888332 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||| ||| |||||||||||| || ||||| || ||||| ||||| Sbjct 16026630 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 16026689 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 16026690 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 16026749 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 16026750 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGAGGTGGGTAGATCATCTCG 16026809 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| ||||||| || || || || |||| Sbjct 16026810 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGATTATCT 16026858 Score = 138 bits (152), Expect = 2e-27 Identities = 213/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 16024876 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCG 16024935 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 16024936 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 16024995 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || ||||| || || |||| || ||||| | |||||| || || |||| || | Sbjct 16024996 CAGGAGAGCATATAGGATTACCCATAAGCCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 16025055 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | || || |||||||| |||| | | | |||| Sbjct 16025056 CCATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACA 16025115 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | || || ||||| || | | ||||| || ||||| |||| Sbjct 16025116 GCTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTC 16025175 Query 8583 CTGT 8586 |||| Sbjct 16025176 CTGT 16025179 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 16027713 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 16027772 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| |||||| ||||||| |||||||| | || ||||| ||||| || Sbjct 16027773 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 16027832 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 16027833 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 16027892 Query 9829 TGTTTTACCTG 9839 | | || |||| Sbjct 16027893 TTTCTTGCCTG 16027903 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || ||| || | Sbjct 16028361 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 16028420 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||||||||| || |||||||||||| || | |||||| | ||||| | Sbjct 16028421 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 16028480 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||| |||||||||| || || |||| Sbjct 16028481 GGTGGGCTCTCAATCAAATGTGACCTGGCTGA 16028512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716863546740160