Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09- 06] 1,479 sequences; 2,391,082,183 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq566 150 4e-31 seq1153 145 2e-29 seq536 107 5e-18 seq825 95.1 3e-14 seq648 89.7 1e-12 seq602 89.7 1e-12 >seq566 Length=2972453 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 801236 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 801179 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||| || ||||| ||||| |||||||| ||||| || ||||||| Sbjct 801178 ACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGC 801119 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | |||||| | ||||| ||| Sbjct 801118 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAACA 801059 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || || ||||| ||| Sbjct 801058 TCCAGAAAGAGTCCACTCTCCATCTGGTT 801030 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||||| |||| Sbjct 801475 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 801419 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| ||||| || ||||| ||||| || || || || Sbjct 801418 TGGA--GCCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 801361 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| || ||||| | ||||| Sbjct 801360 CCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCT 801301 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 801300 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 801259 >seq1153 Length=1501042 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1169146 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1169203 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 1169204 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1169263 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 1169264 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1169323 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1169324 TCCAGAAGGAGTCCACTCTGCACCTGGT 1169351 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1169374 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1169431 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 1169432 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1169491 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 1169492 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1169551 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 1169552 TCCAGAAGGAGTCCACTCTCCACCTGGT 1169579 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 1170803 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1170860 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 1170861 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1170920 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 1170921 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1170980 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 1170981 TCCAGAAGGAGTCCACTCTCCACCTGGT 1171008 Score = 107 bits (118), Expect = 5e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||| |||| ||||| |||||||| || || ||||| || |||||| Sbjct 1170632 GACACCATCGAGAACTTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170691 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 1170692 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170751 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 1170752 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 1170793 >seq536 Length=25944906 Score = 107 bits (118), Expect = 5e-18 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||||||||| | || || || ||||| || ||||| ||| ||| | || Sbjct 23770440 ATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCTTCAAATACA 23770499 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || || || |||||||||| | |||||| | ||| || ||||| || Sbjct 23770500 ATAGAAAATGTGAAGGCCAAGATTCAGG----ATAAGGAACTCTTCCTGATCAGCAGAGA 23770555 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | ||||| || || || || || ||||||||| | ||| | || || ||| | ||| Sbjct 23770556 CCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAA 23770611 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || |||||||| ||| ||||| Sbjct 23770612 AAGGAGTCCACTCTCCATCTTGTGTTGGGACTC 23770644 >seq825 Length=8281254 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCAC-AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 || |||||| ||||||| | | ||||| | | ||||| || ||||| ||| || || Sbjct 4962569 CAGATTTTCATGAAAACCCATATGAGGAAGATC-ATCACTCTTGAGGTTGAACCCTTGGA 4962511 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || ||||||||||| || |||||| ||||| || ||||| Sbjct 4962510 TACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGAAAGGAACTCCTCCTGATCAGCA 4962451 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| |||||| | | || || || ||||||||| ||| | | || | || | | Sbjct 4962450 CAGACTGATCTTCTCTTGCAAGCAACTGGAAGATGGACATACTTTATCTGACTGTAGCAT 4962391 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||| | ||| |||| Sbjct 4962390 TCAAAAGGAGTCCACTCTTCATCTTCTGTTGCGACT 4962355 >seq648 Length=20061788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || ||| | | |||||| ||||| |||| ||| Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTC--AAGCCCAGTG 12805371 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| |||||||||||| || || || |||||||| || | ||| || | ||||| Sbjct 12805372 ACACCACTGAGAACGTCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGC 12805431 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || ||||| || |||||||| || | ||| ||||| | || | || Sbjct 12805432 AGCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATA 12805491 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 |||| ||||| || || ||||| Sbjct 12805492 TCCAGAAAGAGTCCACCCTGCA 12805513 >seq602 Length=3264241 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||| |||| ||||||| | | || || ||||| |||||||||||| ||| || || Sbjct 2398431 ATTTCCGTGGAAACTCTTAGGGTGAAGACCATCACTCTCGAGGTGGAACCCTCGGATACA 2398490 Query 177987 ATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 || | || || ||| | ||||||||| || |||| ||| ||||| | ||||| | Sbjct 2398491 ATAGGAAATGTTAAAGGCCAGGATTCAGGATAAGGAAGAAATTCCTCCTGTTCAGCAGAG 2398550 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||| ||| | || || | || | ||||||||| || | | || || ||| | || Sbjct 2398551 ACTGATCCTTGCTGGCAGGCA-ATTGAAGATGGACATCCTTTGACTGACTACAACATTCA 2398609 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || | || ||||| || |||||||| Sbjct 2398610 AAAGGAGTCCATTCTTCATCTCGTGTTGAGACT 2398642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203708389669926