Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Panthera_20tigris_20altaica_20[refseq_20GCF_5F000464555.1_202013-09-
06] 1,479 sequences; 2,391,082,183 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq566 150 4e-31
seq1153 145 2e-29
seq536 107 5e-18
seq825 95.1 3e-14
seq648 89.7 1e-12
seq602 89.7 1e-12
>seq566
Length=2972453
Score = 150 bits (166), Expect = 4e-31
Identities = 160/209 (77%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 801236 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 801179
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct 801178 ACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGACCAGC 801119
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| || ||||| | |||||| | ||||| |||
Sbjct 801118 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGATTACAACA 801059
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| ||||| || || || ||||| |||
Sbjct 801058 TCCAGAAAGAGTCCACTCTCCATCTGGTT 801030
Score = 150 bits (166), Expect = 4e-31
Identities = 168/222 (76%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| |||||||| || || || || || || |||||||| ||||
Sbjct 801475 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 801419
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| |||||||||| ||||| || ||||| ||||| || || || ||
Sbjct 801418 TGGA--GCCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 801361
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||| || || || ||||| || ||||| | |||||
Sbjct 801360 CCCCCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCT 801301
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| ||||| || || ||||| || ||
Sbjct 801300 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 801259
>seq1153
Length=1501042
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1169146 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1169203
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| |||||||| || || ||||| || |||||||
Sbjct 1169204 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1169263
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1169264 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1169323
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 1169324 TCCAGAAGGAGTCCACTCTGCACCTGGT 1169351
Score = 140 bits (154), Expect = 8e-28
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1169374 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1169431
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| |||||||| || || ||||| || |||||||
Sbjct 1169432 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1169491
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1169492 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1169551
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 1169552 TCCAGAAGGAGTCCACTCTCCACCTGGT 1169579
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 1170803 CAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1170860
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| ||||| |||||||| || || ||||| || |||||||
Sbjct 1170861 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1170920
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1170921 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 1170980
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 1170981 TCCAGAAGGAGTCCACTCTCCACCTGGT 1171008
Score = 107 bits (118), Expect = 5e-18
Identities = 121/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||| |||| ||||| |||||||| || || ||||| || ||||||
Sbjct 1170632 GACACCATCGAGAACTTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1170691
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 1170692 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1170751
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || | | ||||||
Sbjct 1170752 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 1170793
>seq536
Length=25944906
Score = 107 bits (118), Expect = 5e-18
Identities = 152/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
||||||||||||||||| | || || || ||||| || ||||| ||| ||| | ||
Sbjct 23770440 ATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTTGAGGTTGAACCTTCAAATACA 23770499
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|| || || || || |||||||||| | |||||| | ||| || ||||| ||
Sbjct 23770500 ATAGAAAATGTGAAGGCCAAGATTCAGG----ATAAGGAACTCTTCCTGATCAGCAGAGA 23770555
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| ||||| || || || || || ||||||||| | ||| | || || ||| | |||
Sbjct 23770556 CCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATTCAA 23770611
Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| || || || || |||||||| ||| |||||
Sbjct 23770612 AAGGAGTCCACTCTCCATCTTGTGTTGGGACTC 23770644
>seq825
Length=8281254
Score = 95.1 bits (104), Expect = 3e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCAC-AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982
|| |||||| ||||||| | | ||||| | | ||||| || ||||| ||| || ||
Sbjct 4962569 CAGATTTTCATGAAAACCCATATGAGGAAGATC-ATCACTCTTGAGGTTGAACCCTTGGA 4962511
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| || || || || || ||||||||||| || |||||| ||||| || |||||
Sbjct 4962510 TACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGAAAGGAACTCCTCCTGATCAGCA 4962451
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|||| |||||| | | || || || ||||||||| ||| | | || | || | |
Sbjct 4962450 CAGACTGATCTTCTCTTGCAAGCAACTGGAAGATGGACATACTTTATCTGACTGTAGCAT 4962391
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || |||||| | ||| ||||
Sbjct 4962390 TCAAAAGGAGTCCACTCTTCATCTTCTGTTGCGACT 4962355
>seq648
Length=20061788
Score = 89.7 bits (98), Expect = 1e-12
Identities = 142/202 (70%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || | || ||| | | |||||| ||||| |||| |||
Sbjct 12805314 CAGATCTTTGTGAAGACCCTGATGGGCAAAGCCACCACCCTTGAGGTC--AAGCCCAGTG 12805371
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||| |||||||||||| || || || |||||||| || | ||| || | |||||
Sbjct 12805372 ACACCACTGAGAACGTCAAAGTCAAAATCCAAGACAAAGAGGGCACCCCACCTGTCCAGC 12805431
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | || ||||| || |||||||| || | ||| ||||| | || | ||
Sbjct 12805432 AGCATCCGATTTTCGCGGGCAAACAGCTGGAGGCTGGCCACACTCTGTCAGACTGCAATA 12805491
Query 178102 TCCAAAAAGAATCAACACTGCA 178123
|||| ||||| || || |||||
Sbjct 12805492 TCCAGAAAGAGTCCACCCTGCA 12805513
>seq602
Length=3264241
Score = 89.7 bits (98), Expect = 1e-12
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
|||| |||| ||||||| | | || || ||||| |||||||||||| ||| || ||
Sbjct 2398431 ATTTCCGTGGAAACTCTTAGGGTGAAGACCATCACTCTCGAGGTGGAACCCTCGGATACA 2398490
Query 177987 ATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045
|| | || || ||| | ||||||||| || |||| ||| ||||| | ||||| |
Sbjct 2398491 ATAGGAAATGTTAAAGGCCAGGATTCAGGATAAGGAAGAAATTCCTCCTGTTCAGCAGAG 2398550
Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105
||| ||| | || || | || | ||||||||| || | | || || ||| | ||
Sbjct 2398551 ACTGATCCTTGCTGGCAGGCA-ATTGAAGATGGACATCCTTTGACTGACTACAACATTCA 2398609
Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||| || || | || ||||| || ||||||||
Sbjct 2398610 AAAGGAGTCCATTCTTCATCTCGTGTTGAGACT 2398642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203708389669926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |