Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_000924.1
Length=61670
Score E
Sequences producing significant alignments: (Bits) Value
seq9795 96.9 1e-15
seq8065 96.9 1e-15
seq659 84.2 9e-12
>seq9795
Length=220374
Score = 96.9 bits (106), Expect = 1e-15
Identities = 113/152 (74%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 7000 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACGCC 7059
||| ||||||||||| || ||| | | |||||| |||||||| | ||||||||| || ||
Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484
Query 7060 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 7119
|| |||||||| |||||| |||||| || |||||||||| ||||| | ||
Sbjct 198483 AACAACCGGAACAATGCCG---CCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427
Query 7120 ATTAAGGCCGTACTGGTTGGCGACGATCAGCA 7151
||| | || || | ||| || || |||| ||
Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCATCA 198395
>seq8065
Length=27066
Score = 96.9 bits (106), Expect = 1e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 7000 AAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGGGACCAGCCATCAACGCC 7059
||| |||| ||||||||| | || | || | |||||| |||||||||||||| ||
Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754
Query 7060 CACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGG 7119
|| || || | || || || | ||||||||||| || || |||||||| ||||||||
Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694
Query 7120 ATTAAGGCCGTACTGGTTGGCGACGATCAGCAA 7152
|||||| || ||| || ||||||| |||
Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCAACAA 26661
>seq659
Length=6232
Score = 84.2 bits (92), Expect = 9e-12
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 7037 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 7096
||||| ||||| |||||||| || || || || | ||| || || | ||||||||||||
Sbjct 903 ATGCGTGACCAACCATCAACACCAACAACAGGTATGATTCCTTTATTTTTATCAGGGAAG 962
Query 7097 GCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAA 7152
||||| || || || ||||| |||||||| || ||| || ||||||| |||
Sbjct 963 GCGTATATCTCCTTAGTCCAAGGATTAAGCTTATATTGGCCTGCAACGATCAACAA 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 197187131581056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |