Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 255 6e-63
seq7661 87.8 2e-12
>seq8995
Length=8301158
Score = 255 bits (282), Expect = 6e-63
Identities = 585/872 (67%), Gaps = 14/872 (2%)
Strand=Plus/Plus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| |||||||| || | ||||| || | || || || |||||||| || ||||| ||
Sbjct 6971365 ACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6971424
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTT-TAGAGTACCCC 16780
|| ||||| ||||| || ||||| ||||| || ||||| || || || |||
Sbjct 6971425 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG---CCC 6971481
Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840
|| || || | |||||| || || || || || || || ||| || ||| |||
Sbjct 6971482 AGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTC 6971541
Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900
|| || || || || || || || ||||| | || || ||||| ||| ||
Sbjct 6971542 ATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCA 6971601
Query 16901 TCCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958
| | | | || | | |||| | | || ||| | || || ||||| ||||
Sbjct 6971602 T--TGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACA 6971659
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || | || || || || || ||||| |||||||| |||||||| || ||||| |
Sbjct 6971660 TCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACG 6971719
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||||||||||| | ||| ||||| | || || || || ||||
Sbjct 6971720 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAA 6971779
Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
|||| || || || || | ||||| || | | ||||| | || || || |||||||
Sbjct 6971780 AGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGT 6971839
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
| | |||| | |||| || || || | ||| | ||| |||||| || ||||
Sbjct 6971840 CCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGG 6971899
Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256
| || | | || ||| |||| | || | || | || || || || ||||| || ||
Sbjct 6971900 CATTGAAGAGAAATTCCCTTTCT-TTGGA-ATCTTTAATGTAAGTGTCAATGAGGAGACT 6971957
Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316
|||||||| || |||||||| |||||||| || || || || || || || | || ||
Sbjct 6971958 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTC 6972017
Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376
| || |||||||| | || || ||| | | ||||| || || ||||| || ||
Sbjct 6972018 GGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACT 6972077
Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436
|| || || || |||| | ||| ||| |||||| | || || || | || |
Sbjct 6972078 TGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTC 6972137
Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496
||||| || | || ||||| | ||||| || || | |||||||| |||| | ||
Sbjct 6972138 CCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 6972197
Query 17497 CTTTTTATACATATTCCAAATATCATTGTATT 17528
|| |||||||| | ||||||||||| |||||
Sbjct 6972198 TTTCTTATACATCTGCCAAATATCATGGTATT 6972229
Score = 149 bits (164), Expect = 6e-31
Identities = 364/547 (67%), Gaps = 10/547 (2%)
Strand=Plus/Plus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| |||||||| || || |||| || | || || || |||||||| || ||||| ||
Sbjct 6968497 ACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6968556
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTT-TAGAGTACCCC 16780
|| ||||| ||||| || ||||| ||||| || ||||| || || || |||
Sbjct 6968557 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG---CCC 6968613
Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840
|| || || | |||||| || || || || || || || ||| || ||| |||
Sbjct 6968614 AGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTC 6968673
Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900
|| || || || || || || || ||||| | || || ||||| ||| ||
Sbjct 6968674 ATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCA 6968733
Query 16901 TCCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958
| | | | || | | |||| | | || ||| | || || ||||| ||||
Sbjct 6968734 T--TGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACA 6968791
Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018
|||| || | || || || || || ||||| |||||||| |||||||| || ||||| |
Sbjct 6968792 TCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACG 6968851
Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078
| | || |||||| |||||||||||| | ||| ||||| | || || || || ||||
Sbjct 6968852 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAA 6968911
Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
|||| || || || || | ||||| || | | ||||| | || || || |||||||
Sbjct 6968912 AGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGT 6968971
Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198
| | |||| | |||| || || || | ||| | ||| |||||| || ||||
Sbjct 6968972 CCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGG 6969031
Query 17199 CCTTAAA 17205
| || ||
Sbjct 6969032 CATTGAA 6969038
>seq7661
Length=1898141
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| || ||||| || | || |||||| |||||||||||
Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || || |||||||| || || || || | ||||| |
Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480
Query 17106 C 17106
|
Sbjct 818479 C 818479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517448178510120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |