Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8995 255 6e-63 seq7661 87.8 2e-12 >seq8995 Length=8301158 Score = 255 bits (282), Expect = 6e-63 Identities = 585/872 (67%), Gaps = 14/872 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || | ||||| || | || || || |||||||| || ||||| || Sbjct 6971365 ACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6971424 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTT-TAGAGTACCCC 16780 || ||||| ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 6971425 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG---CCC 6971481 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || || || | |||||| || || || || || || || ||| || ||| ||| Sbjct 6971482 AGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTC 6971541 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || || || || || || ||||| | || || ||||| ||| || Sbjct 6971542 ATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCA 6971601 Query 16901 TCCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 | | | | || | | |||| | | || ||| | || || ||||| |||| Sbjct 6971602 T--TGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACA 6971659 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || | || || || || || ||||| |||||||| |||||||| || ||||| | Sbjct 6971660 TCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACG 6971719 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||||||||||| | ||| ||||| | || || || || |||| Sbjct 6971720 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAA 6971779 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| || || || || | ||||| || | | ||||| | || || || ||||||| Sbjct 6971780 AGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGT 6971839 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||| | |||| || || || | ||| | ||| |||||| || |||| Sbjct 6971840 CCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGG 6971899 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | || | || | || || || || ||||| || || Sbjct 6971900 CATTGAAGAGAAATTCCCTTTCT-TTGGA-ATCTTTAATGTAAGTGTCAATGAGGAGACT 6971957 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||||| || |||||||| |||||||| || || || || || || || | || || Sbjct 6971958 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTC 6972017 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||||||| | || || ||| | | ||||| || || ||||| || || Sbjct 6972018 GGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACT 6972077 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 || || || || |||| | ||| ||| |||||| | || || || | || | Sbjct 6972078 TGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTC 6972137 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| || | || ||||| | ||||| || || | |||||||| |||| | || Sbjct 6972138 CCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 6972197 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATT 17528 || |||||||| | ||||||||||| ||||| Sbjct 6972198 TTTCTTATACATCTGCCAAATATCATGGTATT 6972229 Score = 149 bits (164), Expect = 6e-31 Identities = 364/547 (67%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || || |||| || | || || || |||||||| || ||||| || Sbjct 6968497 ACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6968556 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTT-TAGAGTACCCC 16780 || ||||| ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 6968557 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG---CCC 6968613 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 || || || | |||||| || || || || || || || ||| || ||| ||| Sbjct 6968614 AGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTC 6968673 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || || || || || || ||||| | || || ||||| ||| || Sbjct 6968674 ATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCA 6968733 Query 16901 TCCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACA 16958 | | | | || | | |||| | | || ||| | || || ||||| |||| Sbjct 6968734 T--TGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACA 6968791 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || | || || || || || ||||| |||||||| |||||||| || ||||| | Sbjct 6968792 TCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACG 6968851 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||||||||||| | ||| ||||| | || || || || |||| Sbjct 6968852 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAA 6968911 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| || || || || | ||||| || | | ||||| | || || || ||||||| Sbjct 6968912 AGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGT 6968971 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||| | |||| || || || | ||| | ||| |||||| || |||| Sbjct 6968972 CCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGG 6969031 Query 17199 CCTTAAA 17205 | || || Sbjct 6969032 CATTGAA 6969038 >seq7661 Length=1898141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || | || |||||| ||||||||||| Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || || |||||||| || || || || | ||||| | Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 17106 C 17106 | Sbjct 818479 C 818479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517448178510120