Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 320 2e-82
seq608 111 2e-19
seq7661 93.3 4e-14
>seq8995
Length=8301158
Score = 320 bits (354), Expect = 2e-82
Identities = 604/884 (68%), Gaps = 6/884 (1%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| |||||||| || | || || || | || || ||||||||||| || ||||| |
Sbjct 6971365 ACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6971424
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021
|| |||||||||||||| ||||| ||||| || || | ||| | |||||
Sbjct 6971425 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGC 6971484
Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081
||| | | ||||||||| || || || || || || ||| || |||||| ||
Sbjct 6971485 TCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATC 6971544
Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141
|| || || || || || || | || | || | ||||||||| ||| || |
Sbjct 6971545 CCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTG 6971604
Query 16142 TTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200
|| || || | ||| |||||| || ||| | || |||||||| ||||| ||
Sbjct 6971605 ACGATTATTTCCTTTACTCTCTGTTTC-GAAGGTTTGTGCAACAGGTGTTTGAACATCAG 6971663
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
|| | ||||| || || | || || |||||||| |||||||| |||||||| || |
Sbjct 6971664 GCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 6971723
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320
|| ||||| |||||||||||| | ||||||||| | ||||| || || ||||||||
Sbjct 6971724 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAA 6971783
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|| || || || | ||||| || | | ||||| | || ||||| ||||| | |
Sbjct 6971784 GATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCC 6971843
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440
| |||| | |||| || || || | || | |||| |||||| || ||||| ||
Sbjct 6971844 AGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATT 6971903
Query 16441 --AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498
| | || ||| |||| | || ||| | || || || ||||| || | ||| |||
Sbjct 6971904 GAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAATGTAAGTGTCAATGAGGAGACTATAC 6971961
Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558
||||| || |||||||| || ||||| || || || |||||||| || ||||||| |
Sbjct 6971962 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTA 6972021
Query 16559 ATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618
|| || ||||| | ||| || ||| ||| ||| ||||| || || || ||||||||
Sbjct 6972022 ATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 6972081
Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAA 16678
||||| || |||| | || ||| |||||| | || |||| | || | |||
Sbjct 6972082 GCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 6972141
Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738
| | | || ||||| | ||||| || || | ||||||||| |||| | || ||
Sbjct 6972142 TGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 6972201
Query 16739 TTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|||||||| | ||||||||||| ||||| || ||||| | |||
Sbjct 6972202 TTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGAC 6972245
Score = 179 bits (198), Expect = 4e-40
Identities = 367/543 (68%), Gaps = 2/543 (0%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| |||||||| || || || | || | || || ||||||||||| || ||||| |
Sbjct 6968497 ACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6968556
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021
|| |||||||||||||| ||||| ||||| || || | ||| | |||||
Sbjct 6968557 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGC 6968616
Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081
||| | | ||||||||| || || || || || || ||| || |||||| ||
Sbjct 6968617 TCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATC 6968676
Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141
|| || || || || || || | || | || | ||||||||| ||| || |
Sbjct 6968677 CCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTG 6968736
Query 16142 TTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200
|| || || | ||| |||||| || ||| | || |||||||| ||||| ||
Sbjct 6968737 ACGATTATTTCCTTTACTCTCTGTTTC-GAAGGTTTGTGCAACAGGTGTTTGAACATCAG 6968795
Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260
|| | ||||| || || | || || |||||||| |||||||| |||||||| || |
Sbjct 6968796 GCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 6968855
Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320
|| ||||| |||||||||||| | ||||||||| | ||||| || || ||||||||
Sbjct 6968856 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAA 6968915
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|| || || || | ||||| || | | ||||| | || ||||| ||||| | |
Sbjct 6968916 GATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCC 6968975
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440
| |||| | |||| || || || | || | |||| |||||| || ||||| ||
Sbjct 6968976 AGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATT 6969035
Query 16441 AAA 16443
||
Sbjct 6969036 GAA 6969038
>seq608
Length=3558542
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| || || ||||||||||| | || ||||| ||||| |||||
Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| |
Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483
Query 16344 C 16344
|
Sbjct 2088482 C 2088482
>seq7661
Length=1898141
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || || || || | ||||| ||
Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 818479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511318132631880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |