Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8995 320 2e-82 seq608 111 2e-19 seq7661 93.3 4e-14 >seq8995 Length=8301158 Score = 320 bits (354), Expect = 2e-82 Identities = 604/884 (68%), Gaps = 6/884 (1%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || | || || || | || || ||||||||||| || ||||| | Sbjct 6971365 ACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6971424 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || |||||||||||||| ||||| ||||| || || | ||| | ||||| Sbjct 6971425 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGC 6971484 Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081 ||| | | ||||||||| || || || || || || ||| || |||||| || Sbjct 6971485 TCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATC 6971544 Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141 || || || || || || || | || | || | ||||||||| ||| || | Sbjct 6971545 CCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTG 6971604 Query 16142 TTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200 || || || | ||| |||||| || ||| | || |||||||| ||||| || Sbjct 6971605 ACGATTATTTCCTTTACTCTCTGTTTC-GAAGGTTTGTGCAACAGGTGTTTGAACATCAG 6971663 Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 || | ||||| || || | || || |||||||| |||||||| |||||||| || | Sbjct 6971664 GCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 6971723 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || ||||| |||||||||||| | ||||||||| | ||||| || || |||||||| Sbjct 6971724 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAA 6971783 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || || || || | ||||| || | | ||||| | || ||||| ||||| | | Sbjct 6971784 GATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCC 6971843 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 | |||| | |||| || || || | || | |||| |||||| || ||||| || Sbjct 6971844 AGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATT 6971903 Query 16441 --AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 | | || ||| |||| | || ||| | || || || ||||| || | ||| ||| Sbjct 6971904 GAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAATGTAAGTGTCAATGAGGAGACTATAC 6971961 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| || |||||||| || ||||| || || || |||||||| || ||||||| | Sbjct 6971962 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTA 6972021 Query 16559 ATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 || || ||||| | ||| || ||| ||| ||| ||||| || || || |||||||| Sbjct 6972022 ATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCT 6972081 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAA 16678 ||||| || |||| | || ||| |||||| | || |||| | || | ||| Sbjct 6972082 GCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAG 6972141 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 | | | || ||||| | ||||| || || | ||||||||| |||| | || || Sbjct 6972142 TGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 6972201 Query 16739 TTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||||||| | ||||||||||| ||||| || ||||| | ||| Sbjct 6972202 TTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGAC 6972245 Score = 179 bits (198), Expect = 4e-40 Identities = 367/543 (68%), Gaps = 2/543 (0%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || || | || | || || ||||||||||| || ||||| | Sbjct 6968497 ACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGT 6968556 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || |||||||||||||| ||||| ||||| || || | ||| | ||||| Sbjct 6968557 GAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGC 6968616 Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081 ||| | | ||||||||| || || || || || || ||| || |||||| || Sbjct 6968617 TCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATC 6968676 Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141 || || || || || || || | || | || | ||||||||| ||| || | Sbjct 6968677 CCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTG 6968736 Query 16142 TTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200 || || || | ||| |||||| || ||| | || |||||||| ||||| || Sbjct 6968737 ACGATTATTTCCTTTACTCTCTGTTTC-GAAGGTTTGTGCAACAGGTGTTTGAACATCAG 6968795 Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 || | ||||| || || | || || |||||||| |||||||| |||||||| || | Sbjct 6968796 GCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 6968855 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || ||||| |||||||||||| | ||||||||| | ||||| || || |||||||| Sbjct 6968856 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAA 6968915 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || || || || | ||||| || | | ||||| | || ||||| ||||| | | Sbjct 6968916 GATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCC 6968975 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 | |||| | |||| || || || | || | |||| |||||| || ||||| || Sbjct 6968976 AGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATT 6969035 Query 16441 AAA 16443 || Sbjct 6969036 GAA 6969038 >seq608 Length=3558542 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| || || ||||||||||| | || ||||| ||||| ||||| Sbjct 2088602 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 2088543 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 2088542 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2088483 Query 16344 C 16344 | Sbjct 2088482 C 2088482 >seq7661 Length=1898141 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 818479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511318132631880