Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001317.1
Length=30624
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 237 3e-58
>seq7272
Length=98981
Score = 237 bits (262), Expect = 3e-58
Identities = 650/985 (66%), Gaps = 23/985 (2%)
Strand=Plus/Minus
Query 2273 CACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCT 2332
||| | ||| | ||||| |||| || || || | ||||||| ||||| | | ||| |
Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007
Query 2333 GTATTTCTCGGTCAGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCA 2392
||||||||| |||| | ||||||| | || |||||||| |||||||| ||||| |
Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947
Query 2393 CTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGAC 2452
||| |||||||||||||||||||||||| || | | ||||| || ||||| ||
Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887
Query 2453 GCACCCGGCGCTGTCGCCAGTGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGCC 2512
|| || |||||| || || ||||| ||||||||||||||||| |||
Sbjct 41886 AAGGCCCGCCGAGTCGCCCGTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCC 41827
Query 2513 GAACGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCA 2572
||||| | | ||| || ||| || ||| | ||| ||| | |||
Sbjct 41826 AAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCA 41767
Query 2573 GCGCTGCAGCTCCTCGAACGGGAATAC--CGACGCTTTATCGTCGACAAACTCGCACATA 2630
|||| |||| | |||||| || ||| | | | | ||||||||| |||||||
Sbjct 41766 GCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGGTGT--CATCGACAAACCCGCACATG 41709
Query 2631 AACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGG 2690
| |||||| | | ||||| || | ||| |||| ||| |||||||||||
Sbjct 41708 AGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGA 41649
Query 2691 GTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCATCG 2747
||||||| ||| | || ||| | ||||||||||||||||| || | | |||
Sbjct 41648 TTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTCG 41589
Query 2748 TCGCAGAGCTGGCCACCGGCGAGCGCGCGG-TGACTGATGTCAATTTCGATGCGGTCGGC 2806
|| || ||| || || || | ||| || || | ||| | || |||||||| |
Sbjct 41588 CCGGTGAA---GCCTCCAGCCAG-GTGCGAATGGCTCAGGTCCAGCTCTATGCGGTC--C 41535
Query 2807 AATACGGCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGC 2866
| ||| |||| |||||||| | ||| | ||| | | ||| || ||||
Sbjct 41534 TTTTTGGC-GCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTG 41476
Query 2867 CAGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGA 2926
||| | ||| || ||||| || |||| |||||| || |||||| ||
Sbjct 41475 CAGGCTGCTGGGCGTGGAAAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCT 41416
Query 2927 GGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTC 2986
||| || || | ||||| | || || || ||| || | |||||||| ||| || |
Sbjct 41415 GGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATT 41356
Query 2987 GCCGTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTT 3046
||||| | ||| || ||| || | | || || || ||| |||| | ||||| ||
Sbjct 41355 GCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATT 41296
Query 3047 GTTGCCAATGACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGC----GCAAACT 3102
| | | ||| || |||||||| ||| |||| || | | | | ||||||
Sbjct 41295 GCTC---AGGACGATGGGGTCGCCCTTCAAATCGATATCG-CAATGCTCCTTGGCAAACG 41240
Query 3103 GTATGATGTATTCGCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGT 3162
|||||||| | ||||| || | ||||||| |||||||| ||||||||||| |
Sbjct 41239 CGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGAT 41180
Query 3163 TATGGCCGGTCTTGAGTGCTCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAA 3222
| |||| ||||| || || | ||| ||||| ||| || || |||| || || |
Sbjct 41179 TGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGA 41120
Query 3223 TCTGGCGGGATTTGAGAATGTCGCG 3247
||||||| |||||||||||| ||||
Sbjct 41119 TCTGGCGCGATTTGAGAATGGCGCG 41095
Score = 141 bits (156), Expect = 2e-29
Identities = 262/379 (69%), Gaps = 8/379 (2%)
Strand=Plus/Minus
Query 360 CGCCCATGAGCTGGAACGGTACGCGGTGCGCGTCCATCAGGTCGGCGGCGCTGGCTTTCT 419
||||||||||||| || |||||||| ||| ||| |||| || ||| | ||||
Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174
Query 420 TGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGT 479
||||||||||||| |||||||| | || |||||| | |||| | || ||| | |
Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114
Query 480 CCGGTTTTCCATTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGA-GCCCTTTCGAG 538
| ||| || ||| | | ||||||||| || |||||||| | |||||| ||
Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054
Query 539 TTGCGCATCGCCTCGCGCAGCGATTCGACGTCGG---TCGCGCTCTGCGCCGGGTCGGTC 595
| || |||| |||||||| || || ||| | || | || || || ||| ||
Sbjct 43053 ATTT-CAAGGCCTGGCGCAGCGCATCCACATCGTCTTTTGC-CACTTCG--GGATCGCTC 42998
Query 596 ACATACATGATGTAACCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTT 655
| ||| | |||||| || ||||| || || | ||||||| ||| || ||||||||
Sbjct 42997 AGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTG 42938
Query 656 GCGGATTCATTCAGCCAGGCGGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATC 715
|| || ||||| ||||||||||| | |||||| || || | ||||| || || ||
Sbjct 42937 GCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATT 42878
Query 716 TCCTGATTAATGTCGGGCT 734
||||| | | |||||||
Sbjct 42877 TCCTGGTGCACATCGGGCT 42859
Score = 111 bits (122), Expect = 3e-20
Identities = 194/278 (70%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 15047 CGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGGCG--GTCGATA 15104
|| || || ||||||||||||||||| ||||| |||| || | | | | ||||| |
Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015
Query 15105 AGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAAATTCCGC 15163
||||||| |||| || | | | ||||| || || ||||| || ||||| ||||||
Sbjct 25014 AGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGC 24956
Query 15164 GAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCGAAC 15223
|| || || | ||||||||| | ||||| |||||| |||| || |||
Sbjct 24955 GAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAAC 24896
Query 15224 GATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTTCCC 15283
| ||| | ||||||||||| || ||| | ||||||||||| || || || ||
Sbjct 24895 ACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCG 24836
Query 15284 CCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGA 15321
|| |||||| |||| | |||||||| ||||||||
Sbjct 24835 CCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97857697406188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |