Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq7272 237 3e-58 >seq7272 Length=98981 Score = 237 bits (262), Expect = 3e-58 Identities = 650/985 (66%), Gaps = 23/985 (2%) Strand=Plus/Minus Query 2273 CACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCT 2332 ||| | ||| | ||||| |||| || || || | ||||||| ||||| | | ||| | Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007 Query 2333 GTATTTCTCGGTCAGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCA 2392 ||||||||| |||| | ||||||| | || |||||||| |||||||| ||||| | Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947 Query 2393 CTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGAC 2452 ||| |||||||||||||||||||||||| || | | ||||| || ||||| || Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887 Query 2453 GCACCCGGCGCTGTCGCCAGTGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGCC 2512 || || |||||| || || ||||| ||||||||||||||||| ||| Sbjct 41886 AAGGCCCGCCGAGTCGCCCGTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGGCC 41827 Query 2513 GAACGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCA 2572 ||||| | | ||| || ||| || ||| | ||| ||| | ||| Sbjct 41826 AAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGCTGTCCGCATGGCA 41767 Query 2573 GCGCTGCAGCTCCTCGAACGGGAATAC--CGACGCTTTATCGTCGACAAACTCGCACATA 2630 |||| |||| | |||||| || ||| | | | | ||||||||| ||||||| Sbjct 41766 GCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGGTGT--CATCGACAAACCCGCACATG 41709 Query 2631 AACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGG 2690 | |||||| | | ||||| || | ||| |||| ||| ||||||||||| Sbjct 41708 AGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAACAGA 41649 Query 2691 GTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCA---CTGGCCATCG 2747 ||||||| ||| | || ||| | ||||||||||||||||| || | | ||| Sbjct 41648 TTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCCTCG 41589 Query 2748 TCGCAGAGCTGGCCACCGGCGAGCGCGCGG-TGACTGATGTCAATTTCGATGCGGTCGGC 2806 || || ||| || || || | ||| || || | ||| | || |||||||| | Sbjct 41588 CCGGTGAA---GCCTCCAGCCAG-GTGCGAATGGCTCAGGTCCAGCTCTATGCGGTC--C 41535 Query 2807 AATACGGCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGC 2866 | ||| |||| |||||||| | ||| | ||| | | ||| || |||| Sbjct 41534 TTTTTGGC-GCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGCTG 41476 Query 2867 CAGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGA 2926 ||| | ||| || ||||| || |||| |||||| || |||||| || Sbjct 41475 CAGGCTGCTGGGCGTGGAAAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACCGCT 41416 Query 2927 GGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTC 2986 ||| || || | ||||| | || || || ||| || | |||||||| ||| || | Sbjct 41415 GGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAGATT 41356 Query 2987 GCCGTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTT 3046 ||||| | ||| || ||| || | | || || || ||| |||| | ||||| || Sbjct 41355 GCCGTGGTACGACTGCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCGCCATT 41296 Query 3047 GTTGCCAATGACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGC----GCAAACT 3102 | | | ||| || |||||||| ||| |||| || | | | | |||||| Sbjct 41295 GCTC---AGGACGATGGGGTCGCCCTTCAAATCGATATCG-CAATGCTCCTTGGCAAACG 41240 Query 3103 GTATGATGTATTCGCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGT 3162 |||||||| | ||||| || | ||||||| |||||||| ||||||||||| | Sbjct 41239 CGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATCTGAT 41180 Query 3163 TATGGCCGGTCTTGAGTGCTCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAA 3222 | |||| ||||| || || | ||| ||||| ||| || || |||| || || | Sbjct 41179 TGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCCCCGA 41120 Query 3223 TCTGGCGGGATTTGAGAATGTCGCG 3247 ||||||| |||||||||||| |||| Sbjct 41119 TCTGGCGCGATTTGAGAATGGCGCG 41095 Score = 141 bits (156), Expect = 2e-29 Identities = 262/379 (69%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 360 CGCCCATGAGCTGGAACGGTACGCGGTGCGCGTCCATCAGGTCGGCGGCGCTGGCTTTCT 419 ||||||||||||| || |||||||| ||| ||| |||| || ||| | |||| Sbjct 43233 CGCCCATGAGCTGCGGAGGCACGCGGTGGGCGGCCAATTGGTCATCGCGGCTCACGTTCT 43174 Query 420 TGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGT 479 ||||||||||||| |||||||| | || |||||| | |||| | || ||| | | Sbjct 43173 TGATGTTGAAAAATTCATCCTTGGCCGCCGCCTCGCCGATGGGCAGCAGTTGGATGGCTT 43114 Query 480 CCGGTTTTCCATTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGA-GCCCTTTCGAG 538 | ||| || ||| | | ||||||||| || |||||||| | |||||| || Sbjct 43113 TCTCTTTGCCGCCGGGCGAATGGAAAAACAGATTGCGGAAATTGCCCATGCCCTTGGAAG 43054 Query 539 TTGCGCATCGCCTCGCGCAGCGATTCGACGTCGG---TCGCGCTCTGCGCCGGGTCGGTC 595 | || |||| |||||||| || || ||| | || | || || || ||| || Sbjct 43053 ATTT-CAAGGCCTGGCGCAGCGCATCCACATCGTCTTTTGC-CACTTCG--GGATCGCTC 42998 Query 596 ACATACATGATGTAACCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTT 655 | ||| | |||||| || ||||| || || | ||||||| ||| || |||||||| Sbjct 42997 AGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCCGAAACAGCGTG 42938 Query 656 GCGGATTCATTCAGCCAGGCGGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATC 715 || || ||||| ||||||||||| | |||||| || || | ||||| || || || Sbjct 42937 GCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCAGTCCATAGATT 42878 Query 716 TCCTGATTAATGTCGGGCT 734 ||||| | | ||||||| Sbjct 42877 TCCTGGTGCACATCGGGCT 42859 Score = 111 bits (122), Expect = 3e-20 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 15047 CGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGGCG--GTCGATA 15104 || || || ||||||||||||||||| ||||| |||| || | | | | ||||| | Sbjct 25072 CGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAGGGTCA--TTTCGCCTTTGTCGACA 25015 Query 15105 AGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAAATTCCGC 15163 ||||||| |||| || | | | ||||| || || ||||| || ||||| |||||| Sbjct 25014 AGCCCATGCACCCCAGCA-TGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGTTCCGC 24956 Query 15164 GAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCGAAC 15223 || || || | ||||||||| | ||||| |||||| |||| || ||| Sbjct 24955 GAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGGTCAAC 24896 Query 15224 GATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTTCCC 15283 | ||| | ||||||||||| || ||| | ||||||||||| || || || || Sbjct 24895 ACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCGTGCCG 24836 Query 15284 CCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGA 15321 || |||||| |||| | |||||||| |||||||| Sbjct 24835 CCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97857697406188