Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq174 269 2e-67 seq8752 210 2e-49 seq5317 156 3e-33 seq4090 122 6e-23 >seq174 Length=2508933 Score = 269 bits (298), Expect = 2e-67 Identities = 320/431 (74%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || | ||||||||||||||||||||| |||||| || || ||| ||| ||||| Sbjct 728654 TTTTCTTTTACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGACA---GAAGGAACA 728598 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | |||||||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 728597 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 728538 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||||| || | | |||||| | | |||||| || ||| | ||| Sbjct 728537 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 728478 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 |||| ||| | |||||| ||| ||| || ||| | |||| |||||||| |||| Sbjct 728477 TCTTCCTTA---ATAGAACTGTTTCCTGCTATTCAAACCGTATCTAGTTTATTTGTTAAT 728421 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || | |||||| |||||| ||||| | ||| || || | ||||||||||| Sbjct 728420 GCTGGTTGCACAATAAGTTCTAAAGC-TCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 728362 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 || ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| || Sbjct 728361 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTATCTTTTAAAGATCGA 728302 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||| | |||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 728301 TTCTTTTCTGGAGTGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 728242 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 728241 TCTACTGACGA 728231 >seq8752 Length=1377750 Score = 210 bits (232), Expect = 2e-49 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||| | ||||||||||||||||| | ||| || || || |||| Sbjct 337628 ATTAATTGTTCTTTTCATATGCGTCAAATTTGTACTTAATGCCTTTTTCGTCCTGGACAT 337687 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || | ||||| |||||||| Sbjct 337688 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 337747 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || || Sbjct 337748 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 337807 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||| | | |||||| ||||||||||||| Sbjct 337808 GCTTGTTTATGGATTCCTTGCAGACAGAACTTCCTTCCACTATCCAAACCATGTCTACTT 337867 Query 4208 TATT 4211 |||| Sbjct 337868 TATT 337871 >seq5317 Length=6866741 Score = 156 bits (172), Expect = 3e-33 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 5006765 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 5006706 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| ||| || || | ||||||| | ||| | | | || | || || Sbjct 5006705 CAGCATCTTCTCCAGCTGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 5006646 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 5006645 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 5006586 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| || |||| ||| || || || | || || Sbjct 5006585 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATTACAGGGGGGTACCTCTCAGGGTCCTC 5006526 Query 27167 ATTGCG 27172 |||||| Sbjct 5006525 ATTGCG 5006520 >seq4090 Length=8080645 Score = 122 bits (134), Expect = 6e-23 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 3522679 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 3522738 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 3522739 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 3522798 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 3526706 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 3526765 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 3526766 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| |||| |||||| |||||||| Sbjct 3520298 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 3520357 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | ||| Sbjct 3520358 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 3520417 Query 4176 AC 4177 || Sbjct 3520418 AC 3520419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361184899002809