Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq174 269 2e-67
seq8752 210 2e-49
seq5317 156 3e-33
seq4090 122 6e-23
>seq174
Length=2508933
Score = 269 bits (298), Expect = 2e-67
Identities = 320/431 (74%), Gaps = 7/431 (2%)
Strand=Plus/Minus
Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038
|| || | ||||||||||||||||||||| |||||| || || ||| ||| |||||
Sbjct 728654 TTTTCTTTTACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGACA---GAAGGAACA 728598
Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098
| |||||||||| | |||||| || || || | |||| |||| ||||||| | |||
Sbjct 728597 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 728538
Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158
| |||||| |||||||| || | | |||||| | | |||||| || ||| | |||
Sbjct 728537 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 728478
Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218
|||| ||| | |||||| ||| ||| || ||| | |||| |||||||| ||||
Sbjct 728477 TCTTCCTTA---ATAGAACTGTTTCCTGCTATTCAAACCGTATCTAGTTTATTTGTTAAT 728421
Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278
|||| || | |||||| |||||| ||||| | ||| || || | |||||||||||
Sbjct 728420 GCTGGTTGCACAATAAGTTCTAAAGC-TCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 728362
Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338
|| ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| ||
Sbjct 728361 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTATCTTTTAAAGATCGA 728302
Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||||| || ||| | |||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 728301 TTCTTTTCTGGAGTGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 728242
Query 4399 GGTACAGAAGA 4409
||| || ||
Sbjct 728241 TCTACTGACGA 728231
>seq8752
Length=1377750
Score = 210 bits (232), Expect = 2e-49
Identities = 193/244 (79%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||| | ||||||||||||||||| | ||| || || || ||||
Sbjct 337628 ATTAATTGTTCTTTTCATATGCGTCAAATTTGTACTTAATGCCTTTTTCGTCCTGGACAT 337687
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
|||| |||||| |||||||||| | |||||| || || || | ||||| ||||||||
Sbjct 337688 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 337747
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || ||
Sbjct 337748 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 337807
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | | || | ||| || | |||||||| ||| | | |||||| |||||||||||||
Sbjct 337808 GCTTGTTTATGGATTCCTTGCAGACAGAACTTCCTTCCACTATCCAAACCATGTCTACTT 337867
Query 4208 TATT 4211
||||
Sbjct 337868 TATT 337871
>seq5317
Length=6866741
Score = 156 bits (172), Expect = 3e-33
Identities = 182/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986
||| |||| ||| | |||| | | |||||||| || || || |||||||| || | |||
Sbjct 5006765 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 5006706
Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046
||||||||||| ||| || || | ||||||| | ||| | | | || | || ||
Sbjct 5006705 CAGCATCTTCTCCAGCTGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 5006646
Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106
|||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| |
Sbjct 5006645 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 5006586
Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166
||| ||| ||| || ||||| || ||||| || |||| ||| || || || | || ||
Sbjct 5006585 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATTACAGGGGGGTACCTCTCAGGGTCCTC 5006526
Query 27167 ATTGCG 27172
||||||
Sbjct 5006525 ATTGCG 5006520
>seq4090
Length=8080645
Score = 122 bits (134), Expect = 6e-23
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||
Sbjct 3522679 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 3522738
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
| ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | ||||
Sbjct 3522739 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 3522798
Score = 120 bits (132), Expect = 2e-22
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 3526706 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 3526765
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 3526766 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 3526814
Score = 98.7 bits (108), Expect = 7e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||| ||||| |||| |||||| ||||||||
Sbjct 3520298 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 3520357
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | |||
Sbjct 3520358 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 3520417
Query 4176 AC 4177
||
Sbjct 3520418 AC 3520419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361184899002809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |