Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001396.1
Length=7308
Score E
Sequences producing significant alignments: (Bits) Value
seq10526 172 3e-39
seq10043 168 3e-38
>seq10526
Length=22645
Score = 172 bits (190), Expect = 3e-39
Identities = 216/296 (73%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 3650 AGCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACCAC 3709
|||||| | ||||||||| | ||||||||||| ||||| | |||||| |||||||
Sbjct 18183 AGCAGTGGCGCACGCGAGCTGCTGAAGTGGATCGCGCTGCTGACCATGACCGGCGACCAC 18242
Query 3710 GTTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTGCG 3769
|| || || ||| |||| |||||| |||| || | ||| || ||||| || |||
Sbjct 18243 GTGGCAAAAGTGGTCTA----GGCTACCTGCCGGTCGTAAGCGAACTGGGCCGCATCGCG 18298
Query 3770 TTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAGGC 3829
|| ||||| ||||| ||||| ||||||| |||||| || ||||| || || || | ||
Sbjct 18299 TTCCCGCTGTTCGCGCTGGTGATGGCCTGCAACCTCGCCCAGCCGGGCGCGGACCTGCGC 18358
Query 3830 AAGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTGTTGGCGCAACCGTTCCACGCCTGGGCG 3889
|||||| |||| || ||||| ||||| || | ||||| ||||| || || |||
Sbjct 18359 AAGTCGATCCGTCGCCTGGTCGCATGGGGCGTGATCGCGCAGCCGTTGCATGCACTGGCC 18418
Query 3890 TTTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCTGGCTGCTGCCGC 3945
|| || | |||| |||| | ||| |||| || | |||||| |||| || || ||
Sbjct 18419 TTCGGTTCCTGGCTGCCGCTCAACATCCTGCTCACCTTCGCCTTGGCGGCAGCGGC 18474
>seq10043
Length=66076
Score = 168 bits (186), Expect = 3e-38
Identities = 211/287 (74%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 3648 TGAGCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACC 3707
||| |||||| || ||||| | |||||||| | || | || ||||| || |
Sbjct 41424 TGACCAGTAGCGCGCGCGAACTGTTGAAGTGGTTGGCCGTGATCCTGATGACCGGAGATC 41483
Query 3708 ACGTTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTG 3767
|||||||||||||| |||||| ||| |||||||| | | ||| || ||| | |
Sbjct 41484 ACGTTGCCAAGGTGATCTATGGCGGGTACGTGCCTGGACTCAGCGAAGCGGGGCGGGTGG 41543
Query 3768 CGTTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAG 3827
| |||||||| ||||||||||| |||||||||||||| || ||||| | || ||||| |
Sbjct 41544 CCTTTCCGCTGTTCGCACTGGTGATGGCCTACAACCTCGCCCAGCCAGACGCAGATGTGG 41603
Query 3828 GCAAGTCGGTCCGCCGGCTGGTGTGC-TGGGGGCTGTTGGCGCAACCGTTCCACGCCTGG 3886
||||||| || || |||| | | || |||||| || | || || ||| | ||||| | |
Sbjct 41604 GCAAGTCCGTTCGTAGGCTCG-GCGCTTGGGGGTTGGTCGCACAGCCGGTTCACGCGTTG 41662
Query 3887 GCGTTTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCT 3933
|||| || |||||| |||| ||||| | || || ||||||||||
Sbjct 41663 ACGTTCGGGTACTGGCTGCCGCTGAACATTCTGCTCACGTTCGCCCT 41709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23266457674272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |