Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001396.1 Length=7308 Score E Sequences producing significant alignments: (Bits) Value seq10526 172 3e-39 seq10043 168 3e-38 >seq10526 Length=22645 Score = 172 bits (190), Expect = 3e-39 Identities = 216/296 (73%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 3650 AGCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACCAC 3709 |||||| | ||||||||| | ||||||||||| ||||| | |||||| ||||||| Sbjct 18183 AGCAGTGGCGCACGCGAGCTGCTGAAGTGGATCGCGCTGCTGACCATGACCGGCGACCAC 18242 Query 3710 GTTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTGCG 3769 || || || ||| |||| |||||| |||| || | ||| || ||||| || ||| Sbjct 18243 GTGGCAAAAGTGGTCTA----GGCTACCTGCCGGTCGTAAGCGAACTGGGCCGCATCGCG 18298 Query 3770 TTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAGGC 3829 || ||||| ||||| ||||| ||||||| |||||| || ||||| || || || | || Sbjct 18299 TTCCCGCTGTTCGCGCTGGTGATGGCCTGCAACCTCGCCCAGCCGGGCGCGGACCTGCGC 18358 Query 3830 AAGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTGTTGGCGCAACCGTTCCACGCCTGGGCG 3889 |||||| |||| || ||||| ||||| || | ||||| ||||| || || ||| Sbjct 18359 AAGTCGATCCGTCGCCTGGTCGCATGGGGCGTGATCGCGCAGCCGTTGCATGCACTGGCC 18418 Query 3890 TTTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCTGGCTGCTGCCGC 3945 || || | |||| |||| | ||| |||| || | |||||| |||| || || || Sbjct 18419 TTCGGTTCCTGGCTGCCGCTCAACATCCTGCTCACCTTCGCCTTGGCGGCAGCGGC 18474 >seq10043 Length=66076 Score = 168 bits (186), Expect = 3e-38 Identities = 211/287 (74%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 3648 TGAGCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACC 3707 ||| |||||| || ||||| | |||||||| | || | || ||||| || | Sbjct 41424 TGACCAGTAGCGCGCGCGAACTGTTGAAGTGGTTGGCCGTGATCCTGATGACCGGAGATC 41483 Query 3708 ACGTTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTG 3767 |||||||||||||| |||||| ||| |||||||| | | ||| || ||| | | Sbjct 41484 ACGTTGCCAAGGTGATCTATGGCGGGTACGTGCCTGGACTCAGCGAAGCGGGGCGGGTGG 41543 Query 3768 CGTTTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAG 3827 | |||||||| ||||||||||| |||||||||||||| || ||||| | || ||||| | Sbjct 41544 CCTTTCCGCTGTTCGCACTGGTGATGGCCTACAACCTCGCCCAGCCAGACGCAGATGTGG 41603 Query 3828 GCAAGTCGGTCCGCCGGCTGGTGTGC-TGGGGGCTGTTGGCGCAACCGTTCCACGCCTGG 3886 ||||||| || || |||| | | || |||||| || | || || ||| | ||||| | | Sbjct 41604 GCAAGTCCGTTCGTAGGCTCG-GCGCTTGGGGGTTGGTCGCACAGCCGGTTCACGCGTTG 41662 Query 3887 GCGTTTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCT 3933 |||| || |||||| |||| ||||| | || || |||||||||| Sbjct 41663 ACGTTCGGGTACTGGCTGCCGCTGAACATTCTGCTCACGTTCGCCCT 41709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23266457674272