Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001416.1
Length=48502
Score E
Sequences producing significant alignments: (Bits) Value
seq8065 98.7 3e-16
seq9795 96.9 1e-15
>seq8065
Length=27066
Score = 98.7 bits (108), Expect = 3e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 32520 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 32579
||| |||| ||||||||| | || | ||| | |||||| |||||||||||||| ||
Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754
Query 32580 CACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 32639
|| || || | || || || | |||||||| || || || |||||||| ||||||||
Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694
Query 32640 ATTAAGGCCGTACTGGTTGGCAACGATCA 32668
|||||| || ||| ||||||||||
Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCA 26665
>seq9795
Length=220374
Score = 96.9 bits (106), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 32520 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 32579
||| ||||||||||| || ||| | | ||| || |||||||| | ||||||||| || ||
Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484
Query 32580 CACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 32639
|| |||||||| ||||| |||||| ||| |||||||||| ||||| | ||
Sbjct 198483 AACAACCGGAACAATGCC---GCCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427
Query 32640 ATTAAGGCCGTACTGGTTGGCAACGATCA 32668
||| | || || | ||| ||||| ||||
Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCA 198398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155057066863712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |