Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq8065 98.7 3e-16 seq9795 96.9 1e-15 >seq8065 Length=27066 Score = 98.7 bits (108), Expect = 3e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 32520 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 32579 ||| |||| ||||||||| | || | ||| | |||||| |||||||||||||| || Sbjct 26813 AAATTCCAAGCCATCAAAATTAGGGCTACTATTTACGATGCGCGACCAGCCATCAACACC 26754 Query 32580 CACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 32639 || || || | || || || | |||||||| || || || |||||||| |||||||| Sbjct 26753 AACAACAGGGATTATCCCTTTATTTTTATCAGGGAAAGCATATATTTCTTTGGTCCACGG 26694 Query 32640 ATTAAGGCCGTACTGGTTGGCAACGATCA 32668 |||||| || ||| |||||||||| Sbjct 26693 ATTAAGCTTATATTGGCCTGCAACGATCA 26665 >seq9795 Length=220374 Score = 96.9 bits (106), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 32520 AAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAGCCATCAACGCC 32579 ||| ||||||||||| || ||| | | ||| || |||||||| | ||||||||| || || Sbjct 198543 AAACTCCATGCCATCGAATTGCGGATGTTCGTTCATGATGCGTGTCCAGCCATCTACACC 198484 Query 32580 CACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGG 32639 || |||||||| ||||| |||||| ||| |||||||||| ||||| | || Sbjct 198483 AACAACCGGAACAATGCC---GCCCTTATCTGGATAGGCGTAAATCTCTTTAACAAAGGG 198427 Query 32640 ATTAAGGCCGTACTGGTTGGCAACGATCA 32668 ||| | || || | ||| ||||| |||| Sbjct 198426 ATTTAATCCATATTCGTTTGCAACAATCA 198398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155057066863712