Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8995 417 1e-111 seq13960 140 4e-28 seq7661 120 4e-22 seq608 102 1e-16 seq11415 96.9 4e-15 seq12849 93.3 5e-14 >seq8995 Length=8301158 Score = 417 bits (462), Expect = 1e-111 Identities = 653/933 (70%), Gaps = 6/933 (1%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 23845 ||| ||||| |||| || | ||| ||| ||| | || ||||| ||||||||| | Sbjct 6971316 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTTGGATTTGACATCACTCCCATTCT 6971375 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || | || | || | || || || || ||||| || || || | ||| |||||||| Sbjct 6971376 CTGATTCTCGCTTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 6971435 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||| || || | ||||| || || | | | |||| |||| || || | Sbjct 6971436 CATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 6971495 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||||||||| || ||||| || || ||||||| |||||||| || || || || Sbjct 6971496 TCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 6971555 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || || ||| | ||||| || || ||||| || || || | || || Sbjct 6971556 CACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 6971615 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145 ||||| | | || ||| | ||| | ||||| ||||||| || | || || Sbjct 6971616 CTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTC 6971675 Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205 ||||| | |||||| ||||| ||||| | ||| |||||||||||||| || ||||| || Sbjct 6971676 ACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 6971735 Query 24206 GCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTAC 24265 || || || || ||||| ||||| |||||||| || || |||||||| || ||||| || Sbjct 6971736 TCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 6971795 Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 24322 ||| |||||||| | | | ||||||||| | | | |||| |||| Sbjct 6971796 TGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAA 6971855 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 |||||||| |||||||| || ||||||||||| ||||| || ||||| |||||| | | Sbjct 6971856 GGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTC 6971915 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| || || ||||| | |||||||||||||| ||||| || Sbjct 6971916 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTAT 6971975 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| ||||| ||||| || || |||||||| ||||||||||||||| |||||| Sbjct 6971976 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTG 6972035 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | ||| || || | || |||||||| ||||| || ||||| |||||||| || |||| Sbjct 6972036 GCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 6972095 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 ||||| ||||||||| | || || || | || | ||| | | || || || Sbjct 6972096 CACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 6972155 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | ||||| || || |||||||||| || ||||| || || |||||||| | ||| Sbjct 6972156 GGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCA 6972215 Query 24683 GATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || ||||| |||| || ||||| || ||||| Sbjct 6972216 AATATCATGGTATTCGATAGGAAAGATGACAAA 6972248 Score = 223 bits (246), Expect = 4e-53 Identities = 381/552 (69%), Gaps = 3/552 (1%) Strand=Plus/Plus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| ||||||||| | || || || || || | || || || || ||||| || || Sbjct 6968491 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 6968550 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || | ||| ||||||||||| || || | ||||| || || | | | |||| Sbjct 6968551 TCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAAAACCTTGCTAAAG 6968610 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 |||| || || | ||||||||| || ||||| || || ||||||| ||| Sbjct 6968611 CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAAAGTGCAA 6968670 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || || || || || || ||| | ||||| || || ||||| || || Sbjct 6968671 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTATCCTAACT 6968730 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 || | || || ||||| | | || ||| | ||| | ||||| ||| Sbjct 6968731 GCATTGACGATTATTTCCTTTACTCTCTGTTTCGAAGGTTTGTGCAACAGGTGTTTGAAC 6968790 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || | || || ||||| | |||||| ||||| ||||| | ||| ||||||||| Sbjct 6968791 ATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 6968850 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 ||||| || ||||| || || || || || ||||| ||||| |||||||| || || ||| Sbjct 6968851 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAAAGAACCGGAA 6968910 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTG 24305 ||||| || ||||| ||||| |||||||| | | | ||||||||| | | | || Sbjct 6968911 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 6968970 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 || |||| |||||||| |||||||| || ||||||||||| ||||| || Sbjct 6968971 TCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATCGTCTCAATG 6969030 Query 24366 GCATTAAAGAGA 24377 ||||| |||||| Sbjct 6969031 GCATTGAAGAGA 6969042 >seq13960 Length=3940437 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2049915 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2049974 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 2049975 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2050034 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 2050035 CTGTTTCTTATACCATA 2050051 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 2074044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2074103 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||||| || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 2074104 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2074163 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2074164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2074209 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || | ||||| || || || || || || | Sbjct 2054701 CATAGGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 2054760 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 2054761 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2054820 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2054821 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2054880 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 2054881 GTTTATTCGA 2054890 >seq7661 Length=1898141 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 818599 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 818540 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 818539 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 818480 Query 24277 C 24277 | Sbjct 818479 C 818479 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||| || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 816929 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 816870 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| ||||||||||||||| |||||| Sbjct 816869 AATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCT 816824 >seq608 Length=3558542 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 2088600 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 2088541 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 2088540 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2088482 >seq11415 Length=1221423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 21935 ACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCC 21994 ||||| | | |||||| ||| |||| ||| | | || ||||| || |||| ||| ||| Sbjct 353737 ACTTCCTCTATTTCTGGGTAAAATATCCGTGCACAAATGAGCTGTGCAATTCGATCACCC 353678 Query 21995 GTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTA 22054 | || || | || | | ||| ||| ||||| || | || || | |||||| ||| Sbjct 353677 TTTTTGACTTCCAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTA 353618 Query 22055 TAATCTTCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTA 22114 |||||||| ||||| ||||| |||||| ||| ||| | || | || ||||| | | Sbjct 353617 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGA 353559 Query 22115 GGAGCTATTCTACCATAGCA 22134 ||||| | ||| |||||||| Sbjct 353558 GGAGCCACTCTTCCATAGCA 353539 >seq12849 Length=3269951 Score = 93.3 bits (102), Expect = 5e-14 Identities = 175/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | || ||||| Sbjct 3072264 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTAAACTTCC 3072207 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| |||| | || | | || ||||| || ||| ||| ||| | || Sbjct 3072206 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTG 3072147 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 3072146 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 3072087 Query 22061 TCGTCTATTACACCGCCTCCTATATCAATGCCTTTTAGGGACAGACCAGACCTAGGAGCT 22120 || ||||| |||| |||||| ||| ||| | || | || ||||| | |||||| Sbjct 3072086 TCATCTATGACACAAGCTCCTACATCTATGAC-GTTGCTGCCAAGCCAGAACGAGGAGCC 3072028 Query 22121 ATTCTACCATAGCA 22134 | ||| |||||||| Sbjct 3072027 ACTCTTCCATAGCA 3072014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593609839330320