Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6889 91.5 1e-13 >seq6889 Length=11136585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 28924 CACAGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACAT 28983 ||||| ||| || | |||| | | |||| || ||||||||||| ||| | ||||| Sbjct 1034500 CACAGTAACGTTTTCCTTTTAAACCTTATAG-GTCAAAATGCAAATCTTCGTGAAAACCC 1034442 Query 28984 TGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGC 29043 |||| ||||| ||||| ||| || ||| ||| || || | | || | ||| Sbjct 1034441 TGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGG 1034382 Query 29044 AAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCA 29103 || || ||||| ||||| | ||| || || || || || |||||||| |||| Sbjct 1034381 CCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCA 1034322 Query 29104 AACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 | || ||||||||| | ||| | | |||||||| || |||||||| || || || | Sbjct 1034321 AGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGC 1034262 Query 29164 ACATGGT 29170 || |||| Sbjct 1034261 ACCTGGT 1034255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428257386824645