Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq15007 107 4e-19 seq9777 104 5e-18 seq9683 104 5e-18 seq11622 93.3 9e-15 seq10342 91.5 3e-14 seq10415 89.7 1e-13 seq1177 87.8 4e-13 seq10362 82.4 2e-11 >seq15007 Length=612 Score = 107 bits (118), Expect = 4e-19 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 350 TATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCT 409 |||| |||| || |||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 330 TATTTCTGGTAGGCCGTGCGGGACTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCT 271 Query 410 CTACCGACTGAGCTAACGACCC 431 ||||| |||||||||||||||| Sbjct 270 CTACCAACTGAGCTAACGACCC 249 >seq9777 Length=39614 Score = 104 bits (114), Expect = 5e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||| ||||| ||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 5206 TGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTCTGCTCTACCG 5147 Query 416 ACTGAGCTAACGACCCA 432 |||||||||||| |||| Sbjct 5146 ACTGAGCTAACGGCCCA 5130 >seq9683 Length=137075 Score = 104 bits (114), Expect = 5e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 352 TTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCT 411 || |||||||||| || ||||||||| ||||||||||||||||||||||||||||| Sbjct 13329 TTGTTGGTGGGTCCTGCGAGATTCGAACTCGCGACCAACGGATTAAAAGTCCGCTGCTCT 13270 Query 412 ACCGACTGAGCTAACGACCC 431 |||||||||||||| ||||| Sbjct 13269 ACCGACTGAGCTAAAGACCC 13250 >seq11622 Length=276999 Score = 93.3 bits (102), Expect = 9e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 174398 TGGTGGGTCGTCCGCGATTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 174457 Query 416 ACTGAGCTAACGACCC 431 ||||||||||||||| Sbjct 174458 GCTGAGCTAACGACCC 174473 Score = 93.3 bits (102), Expect = 9e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 174567 TGGTGGGTCGTCCGCGATTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 174626 Query 416 ACTGAGCTAACGACCC 431 ||||||||||||||| Sbjct 174627 GCTGAGCTAACGACCC 174642 Score = 93.3 bits (102), Expect = 9e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 174735 TGGTGGGTCGTCCGCGATTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 174794 Query 416 ACTGAGCTAACGACCC 431 ||||||||||||||| Sbjct 174795 GCTGAGCTAACGACCC 174810 >seq10342 Length=50881 Score = 91.5 bits (100), Expect = 3e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 351 ATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTC 410 ||| |||||||| | ||| ||||||||| |||||||||||||||| |||||||||||| Sbjct 24897 ATTTTTGGTGGGCCCTGAGTGATTCGAACACTCGACCAACGGATTAAGAGTCCGCTGCTC 24838 Query 411 TACCGACTGAGCTAA 425 |||| ||||||||| Sbjct 24837 TACCAGCTGAGCTAA 24823 Score = 91.5 bits (100), Expect = 3e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 351 ATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTC 410 ||| |||||||| | ||| ||||||||| |||||||||||||||| |||||||||||| Sbjct 25028 ATTCTTGGTGGGCCCTGAGTGATTCGAACACTCGACCAACGGATTAAGAGTCCGCTGCTC 24969 Query 411 TACCGACTGAGCTAA 425 |||| ||||||||| Sbjct 24968 TACCAGCTGAGCTAA 24954 Score = 86.0 bits (94), Expect = 1e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||| | ||| ||||||||| |||||||||||||||| |||||||||||||||| Sbjct 25146 TGGTGGGCCCTGAGTGATTCGAACACTCGACCAACGGATTAAGAGTCCGCTGCTCTACCA 25087 Query 416 ACTGAGCTAA 425 ||||||||| Sbjct 25086 GCTGAGCTAA 25077 >seq10415 Length=20837 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||| ||| ||||||||||||||| |||| | |||||| |||| |||||||||| Sbjct 10195 TTGGTGGGCCGTCAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACC 10136 Query 415 GACTGAGCTAACGACCC 431 |||||||||||| ||| Sbjct 10135 AACTGAGCTAACGGCCC 10119 >seq1177 Length=405 Score = 87.8 bits (96), Expect = 4e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 345 TTGAATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCG 404 ||||| ||| |||||||| ||| | ||||||||| | |||| ||||||||| |||||| Sbjct 82 TTGAA-ATT-TTGGTGGGGCGTCACAGATTCGAACTGTGGACCTACGGATTAAGAGTCCG 139 Query 405 CTGCTCTACCGACTGAGCTAACGACCC 431 |||||||||| ||||||||||| ||| Sbjct 140 CTGCTCTACCAGCTGAGCTAACGCCCC 166 >seq10362 Length=84117 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 349 ATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGC 408 ||||| ||||| || ||| || ||||||| |||| ||||||||||||||||||||| Sbjct 7918 ATATT-TTGGTAGGGTGTGCGGGGATCGAACCCACGACAAACGGATTAAAAGTCCGCTGC 7860 Query 409 TCTACCGACTGAGCTAACGACCCAATT 435 |||||| |||||||||| |||| ||| Sbjct 7859 TCTACCAGCTGAGCTAAC-ACCCCATT 7834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103395906855286