Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq8189 280 2e-70 seq2443 113 5e-20 seq6856 93.3 5e-14 >seq8189 Length=2356701 Score = 280 bits (310), Expect = 2e-70 Identities = 265/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 291495 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 291554 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 291555 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 291614 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 291615 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 291674 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| | ||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 291675 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 291734 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| || || |||||||| || || || ||||||| |||| Sbjct 291735 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCTGGTCGGACGTACTTC 291794 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 291795 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 291832 Score = 159 bits (176), Expect = 4e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| ||||| | ||| |||| Sbjct 292090 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCGGGGTCCGAGGC 292149 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 292150 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 292209 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 292210 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 292269 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | || || || |||||||||||||| Sbjct 292270 CCAGAGGACGCGCGGAGAAGGCGTACAC 292297 >seq2443 Length=954416 Score = 113 bits (124), Expect = 5e-20 Identities = 204/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || || ||| |||||| || ||| ||| Sbjct 656239 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTATCCATCGGCAACTTTGCCTCGCGCCTGC 656181 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| ||||||||||| || |||||||||| | ||| | ||||||| Sbjct 656180 TGGTGCACCTGTTCCCAGAGCTCTTCACCCACGAGAACCTGCGTAAGCAGTACAACTGCA 656121 Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| ||| |||||| || | | |||| |||||| Sbjct 656120 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 656062 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 656061 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 656003 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||||||||| | |||||| || |||||| Sbjct 656002 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 655957 >seq6856 Length=1849940 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| |||| | | ||| |||| | | |||||||| | ||||| ||||||||| Sbjct 1044786 GGGGAAGCGGGGCTTTTGTATCGAGCTCAATGTCCAGGGTCAGAAAGCGGCGGCTGTACC 1044727 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCG 83170 |||||| | || ||||| | ||||||| || ||| || |||| || ||| | ||| Sbjct 1044726 TGCGCAAGTGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCC 1044667 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG---CGTGCTCATG 83227 |||||||||| || |||||| |||| | ||| || || |||| |||| || Sbjct 1044666 CTGCGGCACACCAGACACCAGGGGATGAACCTGGGATCCTTCGCGAGGGCCGTG-GCA-- 1044610 Query 83228 TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 |||| || ||| |||||||||| | ||| || |||||| Sbjct 1044609 GCGTCACTGGGCATGCGCAGGGCCTCGCCAAGGCCTGCAAAGAGC 1044565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608682201612360