Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq8189 280 2e-70
seq2443 113 5e-20
seq6856 93.3 5e-14
>seq8189
Length=2356701
Score = 280 bits (310), Expect = 2e-70
Identities = 265/338 (78%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| || ||||| ||||| | | | | |||| | ||||| ||||||||||||||
Sbjct 291495 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 291554
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| ||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 291555 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 291614
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||||| |||| || |||||| ||| ||| | | |||||| ||
Sbjct 291615 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 291674
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||| | ||| || |||||||||||||||||||| ||| | | || || |||
Sbjct 291675 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 291734
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||| ||||||||||| || || |||||||| || || || ||||||| ||||
Sbjct 291735 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCTGGTCGGACGTACTTC 291794
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || |||||| | |||| ||||||||||||
Sbjct 291795 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 291832
Score = 159 bits (176), Expect = 4e-34
Identities = 160/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || || || ||||| ||||| | ||| ||||
Sbjct 292090 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCGGGGTCCGAGGC 292149
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || ||||
Sbjct 292150 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 292209
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||| ||||||| ||| |||||| | | || | | | | || || || ||||
Sbjct 292210 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 292269
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| || || || ||||||||||||||
Sbjct 292270 CCAGAGGACGCGCGGAGAAGGCGTACAC 292297
>seq2443
Length=954416
Score = 113 bits (124), Expect = 5e-20
Identities = 204/288 (71%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || || ||| |||||| || ||| |||
Sbjct 656239 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTATCCATCGGCAACTTTGCCTCGCGCCTGC 656181
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| ||||||||||| || |||||||||| | ||| | |||||||
Sbjct 656180 TGGTGCACCTGTTCCCAGAGCTCTTCACCCACGAGAACCTGCGTAAGCAGTACAACTGCA 656121
Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| ||| ||| |||||| || | | |||| ||||||
Sbjct 656120 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 656062
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646
|||||| |||| |||| ||| || || || || |||| ||| ||||| |||
Sbjct 656061 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 656003
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| |||||||||||||||||||| | |||||| || ||||||
Sbjct 656002 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 655957
>seq6856
Length=1849940
Score = 93.3 bits (102), Expect = 5e-14
Identities = 158/225 (70%), Gaps = 7/225 (3%)
Strand=Plus/Minus
Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111
|||| ||| |||| | | ||| |||| | | |||||||| | ||||| |||||||||
Sbjct 1044786 GGGGAAGCGGGGCTTTTGTATCGAGCTCAATGTCCAGGGTCAGAAAGCGGCGGCTGTACC 1044727
Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCG 83170
|||||| | || ||||| | ||||||| || ||| || |||| || ||| | |||
Sbjct 1044726 TGCGCAAGTGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCC 1044667
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG---CGTGCTCATG 83227
|||||||||| || |||||| |||| | ||| || || |||| |||| ||
Sbjct 1044666 CTGCGGCACACCAGACACCAGGGGATGAACCTGGGATCCTTCGCGAGGGCCGTG-GCA-- 1044610
Query 83228 TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272
|||| || ||| |||||||||| | ||| || ||||||
Sbjct 1044609 GCGTCACTGGGCATGCGCAGGGCCTCGCCAAGGCCTGCAAAGAGC 1044565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608682201612360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |