Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq7272 154 3e-33 >seq7272 Length=98981 Score = 154 bits (170), Expect = 3e-33 Identities = 645/1000 (65%), Gaps = 31/1000 (3%) Strand=Plus/Minus Query 1536 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1595 ||||| ||| | ||||| || || || |||| |||||| | ||||| | | ||||| Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007 Query 1596 GTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAAGTCCATGCCTTTCCA 1655 |||||| || || | | ||||||| ||| ||||| | |||||||| || || | Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947 Query 1656 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1715 ||| ||||| || || | ||| ||||| || | | | ||||| ||||| || || Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887 Query 1716 GCATCCGGCGCTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAG 1773 || || |||||| || || | ||||| || |||||||| || || | Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829 Query 1774 CCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1832 || ||||| | || ||| | || ||| | ||| ||| |||| | Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770 Query 1833 GCAGCGTTGCAGCTCCTCGAACGGGAACAC--CGATGCCTTGTCGTCAACAAATTCACAC 1890 |||||| |||| | |||||| || ||| | |||| || ||||| | ||| Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712 Query 1891 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAAC 1950 |||| |||||| | | || ||| | | ||| || | |||| ||||||| Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652 Query 1951 AGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCGCCA---CTGGCCG 2007 || |||||||||| | | || ||| | ||||||||||| ||||| || | | Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592 Query 2008 TCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCG 2067 || || | | |||||| | | || | ||| ||| || | ||| | || | ||| || Sbjct 41591 TC-GC-CGGTGAAGCCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCC 41535 Query 2068 GCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGC 2127 ||||||| | ||| | |||| | ||| | || ||||| | |||| Sbjct 41534 TTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGC 41478 Query 2128 GCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATACC 2186 ||| || || ||||| ||| || ||| |||| || | || ||||||||| Sbjct 41477 TGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACC 41419 Query 2187 TGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCATCGACGTACAG 2246 |||||||| | ||| || || || || ||| || | ||||||| || || Sbjct 41418 GCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAG 41359 Query 2247 GTCGCCGT--TATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCG 2304 | ||||| || |||| |||||||| || | | ||||| || ||| ||| | ||| Sbjct 41358 ATTGCCGTGGTACGACT--GCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCG 41301 Query 2305 CCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGACGGGCA 2361 || ||||| |||||| || ||||| || ||| || | || | | |||| Sbjct 41300 CC---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCA 41244 Query 2362 AAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACAGAAAAATC 2421 || ||||||||||| | ||||| |||| ||||| | |||||||| ||||||||| Sbjct 41243 AACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATC 41184 Query 2422 TGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCG 2481 || || | || || ||||||||| | ||| ||||||||| || || |||| || Sbjct 41183 TGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCC 41124 Query 2482 CCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 2521 || |||||||| ||||| || || |||| |||| |||| Sbjct 41123 CCGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084 Score = 114 bits (126), Expect = 3e-21 Identities = 343/523 (66%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 18282 GCGCTGGGGCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAT 18341 ||| ||||||||||||| |||||| |||||| || ||||| || || ||||| || Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256 Query 18342 GTCGGGGTGAACGGTGTTACCGGCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGT 18399 || | | || || ||||||||| | | || ||| | | |||| | Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCG--ACCTGCAAAGCT 25198 Query 18400 CCGGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACTACGCTGATTCGCCGCGACG 18459 | | || || || ||||||| || ||| |||||| ||||| || | | | | Sbjct 25197 CGGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGG 25138 Query 18460 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACT 18519 | | ||||||||||| || |||||| ||| ||||||| || || | Sbjct 25137 GCTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCA 25078 Query 18520 ACACCCGCACCGCGCAGGTCGTGGCCGACACGATGGCTGAGGCGCACATGTGGGC--GGT 18577 | ||||| || ||||| |||||||||| ||||| ||| | ||| | | | || Sbjct 25077 GCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAG--GGTCATTTCGCCTTTGT 25020 Query 18578 GGACAAGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAAT 18636 ||||||||||| ||| || | || | |||||||| || |||||||||||||| | Sbjct 25019 CGACAAGCCCATGCACCCCAGC-ATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGT 24961 Query 18637 TCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAAT 18696 |||| || || || | ||||| ||| | || | | |||||| || || Sbjct 24960 TCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGG 24901 Query 18697 CCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACACCGG 18756 |||| | ||| | ||||||||||| || ||| | ||||||||||| || || | Sbjct 24900 TCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCG 24841 Query 18757 TGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGA 18799 |||| || || ||| ||||| | |||||||| || ||||| Sbjct 24840 TGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798 Score = 95.1 bits (104), Expect = 3e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 579 CGGCATCGGTGACATACATGATGTATCCGGCATGTGCGCCATTTTCGTAATACTTGCGGC 638 ||| |||| | | ||| | ||||||||||||||| ||||| | ||||||| ||| | Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949 Query 639 GGAACAACGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 698 | |||| ||||||||||||||| |||||||| || | || ||| || || | ||||| Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889 Query 699 GGCCGTACAGCTCCTGATTAATATCCGGCT 728 | || || | ||||| | | ||| |||| Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107356798419690