Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001895.1
Length=33593
Score E
Sequences producing significant alignments: (Bits) Value
seq7272 154 3e-33
>seq7272
Length=98981
Score = 154 bits (170), Expect = 3e-33
Identities = 645/1000 (65%), Gaps = 31/1000 (3%)
Strand=Plus/Minus
Query 1536 CACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTT 1595
||||| ||| | ||||| || || || |||| |||||| | ||||| | | |||||
Sbjct 42066 CACGATCTGCAGGACGCCCTGGCCCAGACCTGTGGAATCAATGCAGATGTGTGCCACGTT 42007
Query 1596 GTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAAGTCCATGCCTTTCCA 1655
|||||| || || | | ||||||| ||| ||||| | |||||||| || || |
Sbjct 42006 GTATTTCTCTGTCATCTGGCGGATGACTTCGGCCTGCGCTTCAAAGTCCGCTCCCTTGAA 41947
Query 1656 CTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC 1715
||| ||||| || || | ||| ||||| || | | | ||||| ||||| || ||
Sbjct 41946 CTGCATGCGCTCCAGCATGCGGAACTTGCCGCCCGGCTTTTCTGGCGGGGCCAGCACTAC 41887
Query 1716 GCATCCGGCGCTGTCGCCACGGTGTGAC--GGGTCGTAACCAATCCATACCGGGCGGGAG 1773
|| || |||||| || || | ||||| || |||||||| || || |
Sbjct 41886 AAGGCCCGCCGAGTCGCCC--GTATGGCTGGGGTCATAGCCAATCCAGACGGGCTTTTGG 41829
Query 1774 CCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AGCGTGTCGACCAT 1832
|| ||||| | || ||| | || ||| | ||| ||| |||| |
Sbjct 41828 CCAAACGGCCGCAACGTGAAGGGCTTGAAATCGCTCCACGCATCCCAGC-TGTCCGCATG 41770
Query 1833 GCAGCGTTGCAGCTCCTCGAACGGGAACAC--CGATGCCTTGTCGTCAACAAATTCACAC 1890
|||||| |||| | |||||| || ||| | |||| || ||||| | |||
Sbjct 41769 GCAGCGCATCAGCGTGGACAGCGGGAAAACAGCGAAGG--TGTCATCGACAAACCCGCAC 41712
Query 1891 ATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAAC 1950
|||| |||||| | | || ||| | | ||| || | |||| |||||||
Sbjct 41711 ATGAGCAGGTTGTCCCATTCCTCGTCCGAATACTCGAAGCGCAGTTCGTCAAGGTCGAAC 41652
Query 1951 AGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCGCCA---CTGGCCG 2007
|| |||||||||| | | || ||| | ||||||||||| ||||| || | |
Sbjct 41651 AGATTGCAGCCGCCGCGCTGCGCATCCAGCACCGTGACAATCTGCCGCCATATCTTGTCC 41592
Query 2008 TCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCG 2067
|| || | | |||||| | | || | ||| ||| || | ||| | || | ||| ||
Sbjct 41591 TC-GC-CGGTGAAGCCTCCAGCCAGGTGCGA-ATGGCTCAGGTCCAGCTCTATGCGGTCC 41535
Query 2068 GCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGC 2127
||||||| | ||| | |||| | ||| | || ||||| | ||||
Sbjct 41534 TTTT---TGGCGCGCTTCTTGTTGATGCGTTCGGCGCTCCACAGCGCATAGGCCTGGTGC 41478
Query 2128 GCCAGCGTGGACGGGGTGGAGAAATAG-GTCGAGCGCAGGTGACTCTGTGAGGCCATACC 2186
||| || || ||||| ||| || ||| |||| || | || |||||||||
Sbjct 41477 TGCAGGCTGCTGGGCGTGGA-AAACAGCGTCTTGCGCCAATGCTTGTGGATGGCCATACC 41419
Query 2187 TGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCATCGACGTACAG 2246
|||||||| | ||| || || || || ||| || | ||||||| || ||
Sbjct 41418 GCTGGCCACCTTCCACAGCTCCGTGAAGTTGTTGACCCAAAAGAATTCATCGAAATAGAG 41359
Query 2247 GTCGCCGT--TATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCG 2304
| ||||| || |||| |||||||| || | | ||||| || ||| ||| | |||
Sbjct 41358 ATTGCCGTGGTACGACT--GCGCGGTGCGGGCGCTCGTGCCCAGGAAATACAGCGTGGCG 41301
Query 2305 CCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC---AACCAGACGGGCA 2361
|| ||||| |||||| || ||||| || ||| || | || | | ||||
Sbjct 41300 CC---ATTGCTCAGGACGATGGGGTCGCCCTTCAAATCGATATCGCAATGCTCCTTGGCA 41244
Query 2362 AAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACAGAAAAATC 2421
|| ||||||||||| | ||||| |||| ||||| | |||||||| |||||||||
Sbjct 41243 AACGCGATGATGTACTGCCGGAAAACATGGGCCTGCGCACGGCTGGCCGAAAGAAAAATC 41184
Query 2422 TGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCG 2481
|| || | || || ||||||||| | ||| ||||||||| || || |||| ||
Sbjct 41183 TGATTGCGGCCCGTCTTCAGGGCATCAATCAGGGCCTCGCGGCCGAAGTACCACGTTGCC 41124
Query 2482 CCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCT 2521
|| |||||||| ||||| || || |||| |||| ||||
Sbjct 41123 CCGATCTGGCGCGATTTGAGAATGGCGCGCGTGCGCTGCT 41084
Score = 114 bits (126), Expect = 3e-21
Identities = 343/523 (66%), Gaps = 10/523 (2%)
Strand=Plus/Minus
Query 18282 GCGCTGGGGCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAT 18341
||| ||||||||||||| |||||| |||||| || ||||| || || ||||| ||
Sbjct 25315 GCGATGGGGCTGCGCGCCCGCATCGACGTGGAGCAAGGTTGGCACAAGACCCTGTCAAAC 25256
Query 18342 GTCGGGGTGAACGGTGTTACCGGCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGT 18399
|| | | || || ||||||||| | | || ||| | | |||| |
Sbjct 25255 GTGCCGCTAAATGGCCCGGTGGGCATCAGCAAGGACGTGCATTTCG--ACCTGCAAAGCT 25198
Query 18400 CCGGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACTACGCTGATTCGCCGCGACG 18459
| | || || || ||||||| || ||| |||||| ||||| || | | | |
Sbjct 25197 CGGAGACGGACGCAAACCTGCTCAATGAGGGCAACGTCACCACGCTCATCAACTACCAGG 25138
Query 18460 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACT 18519
| | ||||||||||| || |||||| ||| ||||||| || || |
Sbjct 25137 GCTATCGCTTCTGGGGATCGCGCACCTGCAGCACCGACGAACTGTTCCGATTCGAGTCCA 25078
Query 18520 ACACCCGCACCGCGCAGGTCGTGGCCGACACGATGGCTGAGGCGCACATGTGGGC--GGT 18577
| ||||| || ||||| |||||||||| ||||| ||| | ||| | | | ||
Sbjct 25077 GCGTGCGCACTGCCCAGGTGCTGGCCGACACCATGGCAGAG--GGTCATTTCGCCTTTGT 25020
Query 18578 GGACAAGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAAT 18636
||||||||||| ||| || | || | |||||||| || |||||||||||||| |
Sbjct 25019 CGACAAGCCCATGCACCCCAGC-ATGGTGAAAGACATCGTGGAAGGCATCAATGCCAAGT 24961
Query 18637 TCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAAT 18696
|||| || || || | ||||| ||| | || | | |||||| || ||
Sbjct 24960 TCCGCGAACTCAAGGCCCTGGGCTACATCCTCGACGGCCGCGCCTGGTTTGACGCCGAGG 24901
Query 18697 CCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACACCGG 18756
|||| | ||| | ||||||||||| || ||| | ||||||||||| || || |
Sbjct 24900 TCAACACCACAGAAGCGCTCAAGGCCGGCAAGCTGGTGCTTGACTACGACTACACGCCCG 24841
Query 18757 TGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGA 18799
|||| || || ||| ||||| | |||||||| || |||||
Sbjct 24840 TGCCGCCGCTGGAAGACCTGGGATTCCGCCAGCGCATCACCGA 24798
Score = 95.1 bits (104), Expect = 3e-15
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 579 CGGCATCGGTGACATACATGATGTATCCGGCATGTGCGCCATTTTCGTAATACTTGCGGC 638
||| |||| | | ||| | ||||||||||||||| ||||| | ||||||| ||| |
Sbjct 43008 CGGGATCGCTCAGATAGAGGATGTATCCGGCATGGCTCCCATTGTTGTAATACCGGCGCC 42949
Query 639 GGAACAACGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCA 698
| |||| ||||||||||||||| |||||||| || | || ||| || || | |||||
Sbjct 42948 GAAACAGCGTGGCCGACTCATTGAGCCAGGCGGACTGCAGCGCGGCCAGGTACTGCGGCA 42889
Query 699 GGCCGTACAGCTCCTGATTAATATCCGGCT 728
| || || | ||||| | | ||| ||||
Sbjct 42888 GTCCATAGATTTCCTGGTGCACATCGGGCT 42859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107356798419690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |