Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq12661 122 8e-23
seq9853 118 9e-22
seq6889 107 2e-18
seq11633 91.5 1e-13
seq8560 87.8 2e-12
seq7969 84.2 2e-11
>seq12661
Length=3984070
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || |||||||| || || ||||| || || |||| | ||||||
Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTC 2676605
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || |||| |||| |||||| || || || |||||||||||||||
Sbjct 2676604 CAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2676545
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | || ||||| || ||||||||| | ||| | || ||
Sbjct 2676544 GATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 2676485
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || ||||| ||||||||
Sbjct 2676484 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq9853
Length=4041771
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||||| || || ||||| || || |||||| |||||
Sbjct 359800 CACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTG 359859
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || | | |||| ||||||||||| || || || |||||||||| ||||
Sbjct 359860 CAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTG 359919
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || ||| | |||||| || ||||||||| | || | || ||
Sbjct 359920 GATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 359979
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || ||||| ||||||||
Sbjct 359980 GCCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq6889
Length=11136585
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || ||||||||||| | |||||| ||| ||
Sbjct 1034027 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCC 1034086
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || ||||| ||||| ||
Sbjct 1034087 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034146
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1034147 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1034206
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 1034207 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || ||||||||||| | |||||| ||| ||
Sbjct 1034255 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1034314
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || ||||| ||||| ||
Sbjct 1034315 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034374
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 1034375 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1034434
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| ||||| || || || |||||
Sbjct 1034435 CCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| |||||||||||||| | |||||| ||| ||
Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || ||||| ||||| ||
Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | ||| |||||| || ||| |||| | ||| | | |||
Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTG 1033978
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 1033979 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq11633
Length=4562951
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/217 (69%), Gaps = 7/217 (3%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTT-------TTGAATGTTGTAATCGCTCATAGTGCGCG 118581
||||| ||| | ||||||||||| ||| || ||||| || | |||||
Sbjct 4176223 CACCATGTGCAGGGTAGACTCTTTCTGGATATTGGATATTGTATTCTGACGGAGTGCAGC 4176164
Query 118582 TATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641
|| ||| |||||| | || ||| | || ||| |||| || || || || ||||||||||
Sbjct 4176163 CATTCTCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCT 4176104
Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701
||||| ||||| ||| || | || |||||| || ||||||| | | ||| |
Sbjct 4176103 TGTCTCGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCACAAGGGTAA 4176044
Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| |||| || || ||||| ||||||||
Sbjct 4176043 TGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4176007
>seq8560
Length=3069389
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||||||||| || || | || ||||| |||||||||||||| || || ||| ||
Sbjct 2390290 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 2390231
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || | || |||||||| |||| || | ||||| || ||||| || || |||||
Sbjct 2390230 ATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTT 2390172
Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
|| || || | || | ||| | || || | | |||||||| || || |
Sbjct 2390171 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGAT 2390112
Query 118703 CGTTTTGCCGGTC-AGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||| ||||| || ||||||||||||||
Sbjct 2390111 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075
>seq7969
Length=7749895
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||| ||| || || | || | |||| ||| || |||
Sbjct 592658 CACCAAGTGTAGGGTGGACTTTTTCTGGATATAGT---CTGACATATTGCAGCCATTCTC 592602
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| | |||| | | || |||| ||||||||| || || | | |||||||||||
Sbjct 592601 TGGCTGTATGCCAGTGAAAATCAGACTCTGCTGATCAGGTGGGAAGTCCTCCTTGTCTTG 592542
Query 118649 AATTTTTTGTTTAACCTG-TTCGACG--GTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
||||| ||| ||||| ||| | ||||| || |||| ||||| ||| | ||
Sbjct 592541 GATTTTGGCTTTGACCTGATTCCCAGTAGTGTCACTGGTCTCAACCTCATGGGTGATGGT 592482
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || ||||| ||||| |||||||
Sbjct 592481 CTTGCCTGTTAGGGTTTTCACAAAGGTCTGCAT 592449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433750778428828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |