Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12661 122 8e-23 seq9853 118 9e-22 seq6889 107 2e-18 seq11633 91.5 1e-13 seq8560 87.8 2e-12 seq7969 84.2 2e-11 >seq12661 Length=3984070 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || || ||||| || || |||| | |||||| Sbjct 2676664 CACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATCCTC 2676605 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || |||| |||| |||||| || || || ||||||||||||||| Sbjct 2676604 CAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2676545 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || ||||| || ||||||||| | ||| | || || Sbjct 2676544 GATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 2676485 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 2676484 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455 >seq9853 Length=4041771 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||||| || || ||||| || || |||||| ||||| Sbjct 359800 CACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTG 359859 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || | | |||| ||||||||||| || || || |||||||||| |||| Sbjct 359860 CAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTG 359919 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || ||| | |||||| || ||||||||| | || | || || Sbjct 359920 GATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 359979 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| |||||||| Sbjct 359980 GCCCATCAGCGTCTTCACAAAGATCTGCAT 360009 >seq6889 Length=11136585 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 1034027 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCC 1034086 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 1034087 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034146 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 1034147 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1034206 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 1034207 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 1034255 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1034314 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 1034315 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034374 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 1034375 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1034434 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || || ||||| Sbjct 1034435 CCGGTCAGGGTTTTCACGAAGATTTGCAT 1034463 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| |||||||||||||| | |||||| ||| || Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| |||||| || ||| |||| | ||| | | ||| Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTG 1033978 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 1033979 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007 >seq11633 Length=4562951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/217 (69%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTT-------TTGAATGTTGTAATCGCTCATAGTGCGCG 118581 ||||| ||| | ||||||||||| ||| || ||||| || | ||||| Sbjct 4176223 CACCATGTGCAGGGTAGACTCTTTCTGGATATTGGATATTGTATTCTGACGGAGTGCAGC 4176164 Query 118582 TATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 || ||| |||||| | || ||| | || ||| |||| || || || || |||||||||| Sbjct 4176163 CATTCTCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCT 4176104 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||||| ||| || | || |||||| || ||||||| | | ||| | Sbjct 4176103 TGTCTCGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCACAAGGGTAA 4176044 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| || || ||||| |||||||| Sbjct 4176043 TGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4176007 >seq8560 Length=3069389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| || || | || ||||| |||||||||||||| || || ||| || Sbjct 2390290 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 2390231 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | || |||||||| |||| || | ||||| || ||||| || || ||||| Sbjct 2390230 ATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGGAATTCCTTCCTT 2390172 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || | || | ||| | || || | | |||||||| || || | Sbjct 2390171 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCAGAGGGCTCGACCTTGAGAGTGAT 2390112 Query 118703 CGTTTTGCCGGTC-AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||| ||||| || |||||||||||||| Sbjct 2390111 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 2390075 >seq7969 Length=7749895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||| ||| || || | || | |||| ||| || ||| Sbjct 592658 CACCAAGTGTAGGGTGGACTTTTTCTGGATATAGT---CTGACATATTGCAGCCATTCTC 592602 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| | |||| | | || |||| ||||||||| || || | | ||||||||||| Sbjct 592601 TGGCTGTATGCCAGTGAAAATCAGACTCTGCTGATCAGGTGGGAAGTCCTCCTTGTCTTG 592542 Query 118649 AATTTTTTGTTTAACCTG-TTCGACG--GTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| ||| ||||| ||| | ||||| || |||| ||||| ||| | || Sbjct 592541 GATTTTGGCTTTGACCTGATTCCCAGTAGTGTCACTGGTCTCAACCTCATGGGTGATGGT 592482 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || ||||| ||||| ||||||| Sbjct 592481 CTTGCCTGTTAGGGTTTTCACAAAGGTCTGCAT 592449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433750778428828