Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq14023 91.5 3e-13 >seq14023 Length=4856233 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| || |||||||| ||||||||| | || ||||| Sbjct 1734391 GCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 1734332 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || | || || | |||||||| ||||| |||||||| || || || || || Sbjct 1734331 TTAGCTGCCTTCGGCCCGTGGATTCAGAAA-TATCTCTGGTGGAAGCGATACCTGACCAT 1734273 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 1734272 GCTGCAGCTGGT 1734261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923023019742360