Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9853 111 2e-19 seq6889 105 8e-18 seq6556 102 9e-17 seq4411 102 9e-17 seq4752 100 3e-16 seq14001 98.7 1e-15 seq3570 98.7 1e-15 seq899 98.7 1e-15 seq330 91.5 2e-13 seq11175 87.8 2e-12 seq10780 87.8 2e-12 seq3784 86.0 7e-12 seq2611 82.4 9e-11 >seq9853 Length=4041771 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||||| |||| ||| ||| || || |||||||| || | | Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || | ||||| || || | ||| || || ||||||||||| | || Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| |||||| ||||| | | | ||||| || | || || Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACC 359962 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCC 43192 || | |||||||| |||||| | |||||||| |||||||| ||||| | | |||| Sbjct 359963 TCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCATCTCTGCGCC 360018 >seq6889 Length=11136585 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 1034272 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1034331 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 1034332 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 1034391 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || || || || Sbjct 1034392 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 1034451 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 1034452 GAAGATTTGCATTTTGAC 1034469 >seq6556 Length=284183 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 60057 AAAAATTT-----TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 20954 AAAAATTTCAACGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 20895 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||| |||||| Sbjct 20894 GATACTCACCACTATACTAACGAGGA 20869 >seq4411 Length=2306675 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 366373 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 366432 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 366433 TACTAACGAGGAGTGA 366448 >seq4752 Length=355175 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 189054 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 188995 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 188994 ATACTAACGAGGA 188982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 243295 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 243354 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 243355 TACTAACGAGGA 243366 >seq14001 Length=1541221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 64749 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 64690 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 64689 TACTAACGAGGA 64678 >seq3570 Length=300636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 298462 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 298521 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 298522 TACTAACGAGGA 298533 >seq899 Length=2520420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2277454 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2277513 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2277514 TACTAACGAGGA 2277525 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2280315 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2280374 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2280375 TACTAACGAGGA 2280386 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||| ||||| | || Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433 Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || ||| | | || || || |||| || | | ||||| || | ||||| Sbjct 2265434 ATGC-CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCAC 2265492 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || |||||||| || || || |||||||||||||| |||||| Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541 >seq330 Length=2318937 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 169577 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 169636 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 169637 ATACTAACGAGGA 169649 >seq11175 Length=1271544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| | ||||||||| |||||||||||||| ||||||||| || ||||||||| Sbjct 141521 TTGTCTCCCCATCAGGGAATCAAACCCTGGTCTCCCACGTGACAGGTGGGGATACTCACC 141462 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| ||||| Sbjct 141461 ACTATACTAAAGAGGA 141446 >seq10780 Length=1684181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||| |||| || ||||||||||||| Sbjct 455628 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTAACAGATGGGGATACTCACCACTA 455569 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 455568 TACTAACGAGGAT 455556 >seq3784 Length=2543480 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||| | |||||||||| ||||||||||||| Sbjct 1034036 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCACATGACAGGCGGGGATACTCACCACTA 1034095 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 1034096 TACCAACGAGGA 1034107 >seq2611 Length=333872 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||||| |||||||||||| || ||||||| || ||||||||||||| Sbjct 77596 CTCCCTGTCAGGGAATCGGACCCTGGTCTCCAGCATGACAGGTGGGGATACTCACCACTA 77537 Query 60126 TACTACCGAGGAT 60138 ||||| |||||| Sbjct 77536 TACTAATGAGGAT 77524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571709962484520