Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq9853 111 2e-19
seq6889 105 8e-18
seq6556 102 9e-17
seq4411 102 9e-17
seq4752 100 3e-16
seq14001 98.7 1e-15
seq3570 98.7 1e-15
seq899 98.7 1e-15
seq330 91.5 2e-13
seq11175 87.8 2e-12
seq10780 87.8 2e-12
seq3784 86.0 7e-12
seq2611 82.4 9e-11
>seq9853
Length=4041771
Score = 111 bits (122), Expect = 2e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| | ||| | ||||| |||| ||| ||| || || |||||||| || | |
Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || | ||||| || || | ||| || || ||||||||||| | ||
Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||| ||| |||||| ||||| | | | ||||| || | || ||
Sbjct 359903 ATGCCCTCCTCGTCTTGGATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACC 359962
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCC 43192
|| | |||||||| |||||| | |||||||| |||||||| ||||| | | ||||
Sbjct 359963 TCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCATCTCTGCGCC 360018
>seq6889
Length=11136585
Score = 105 bits (116), Expect = 8e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||||| ||||| || | || || |||||||| || || ||
Sbjct 1034272 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1034331
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| | ||||||||| | || | || ||||| ||| ||| || || | |
Sbjct 1034332 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 1034391
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||| || | ||||| || | |||||||| ||||| || || || || ||
Sbjct 1034392 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 1034451
Query 43172 AAAGATTTGCATTTTTAC 43189
|||||||||||||| ||
Sbjct 1034452 GAAGATTTGCATTTTGAC 1034469
>seq6556
Length=284183
Score = 102 bits (112), Expect = 9e-17
Identities = 74/86 (86%), Gaps = 5/86 (6%)
Strand=Plus/Minus
Query 60057 AAAAATTT-----TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111
|||||||| ||||| || | ||||||||||||| |||||||||||||||||||||
Sbjct 20954 AAAAATTTCAACGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 20895
Query 60112 CATACTCACCACTATACTACCGAGGA 60137
|||||||||||||||||| ||||||
Sbjct 20894 GATACTCACCACTATACTAACGAGGA 20869
>seq4411
Length=2306675
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 366373 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 366432
Query 60126 TACTACCGAGGATTGA 60141
||||| |||||| |||
Sbjct 366433 TACTAACGAGGAGTGA 366448
>seq4752
Length=355175
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 189054 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 188995
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 188994 ATACTAACGAGGA 188982
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 243295 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 243354
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 243355 TACTAACGAGGA 243366
>seq14001
Length=1541221
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 64749 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 64690
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 64689 TACTAACGAGGA 64678
>seq3570
Length=300636
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 298462 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 298521
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 298522 TACTAACGAGGA 298533
>seq899
Length=2520420
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2277454 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2277513
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2277514 TACTAACGAGGA 2277525
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2280315 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2280374
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2280375 TACTAACGAGGA 2280386
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | || | |||| |||| ||| ||| || || || ||||| |||| |
Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || ||| | || || ||||| || || || || || | | ||| ||||| | ||
Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433
Query 43077 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| || || ||| | | || || || |||| || | | ||||| || | |||||
Sbjct 2265434 ATGC-CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCAC 2265492
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || |||||||| || || || |||||||||||||| ||||||
Sbjct 2265493 CTCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 2265541
>seq330
Length=2318937
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 169577 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 169636
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 169637 ATACTAACGAGGA 169649
>seq11175
Length=1271544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| | ||||||||| |||||||||||||| ||||||||| || |||||||||
Sbjct 141521 TTGTCTCCCCATCAGGGAATCAAACCCTGGTCTCCCACGTGACAGGTGGGGATACTCACC 141462
Query 60122 ACTATACTACCGAGGA 60137
||||||||| |||||
Sbjct 141461 ACTATACTAAAGAGGA 141446
>seq10780
Length=1684181
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| |||||||||||| |||| || |||||||||||||
Sbjct 455628 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTAACAGATGGGGATACTCACCACTA 455569
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 455568 TACTAACGAGGAT 455556
>seq3784
Length=2543480
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| |||||||| | |||||||||| |||||||||||||
Sbjct 1034036 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCACATGACAGGCGGGGATACTCACCACTA 1034095
Query 60126 TACTACCGAGGA 60137
||| | ||||||
Sbjct 1034096 TACCAACGAGGA 1034107
>seq2611
Length=333872
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| | |||||||||| |||||||||||| || ||||||| || |||||||||||||
Sbjct 77596 CTCCCTGTCAGGGAATCGGACCCTGGTCTCCAGCATGACAGGTGGGGATACTCACCACTA 77537
Query 60126 TACTACCGAGGAT 60138
||||| ||||||
Sbjct 77536 TACTAATGAGGAT 77524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571709962484520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |