Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq7029 107 7e-19 seq10588 102 3e-17 seq12839 93.3 2e-14 seq10981 89.7 2e-13 >seq7029 Length=148368 Score = 107 bits (118), Expect = 7e-19 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCG-- 48971 ||||| || |||||| |||| | ||||||||| | | || | |||||||||||| Sbjct 76562 TGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACCGTT 76621 Query 48972 CGGATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGC 49031 ||| || ||| ||| | || |||||||| || | |||||| ||||| || ||||| Sbjct 76622 CGG-TG-GAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGCGC 76679 Query 49032 CATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076 ||||||||| || || |||||| | |||||| | ||||||||||| Sbjct 76680 CATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGA 76724 >seq10588 Length=38962 Score = 102 bits (112), Expect = 3e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 11595 CAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGGCGACTTCCTCAAT 11654 ||||||||||| || || |||||||||||||| | || ||| | ||||||| | | | Sbjct 18789 CAAGAGAAGCTGGCCGATATCTTCAAGGACGTGCAGGAGAAGATCGGCGACTACGCCCAA 18848 Query 11655 ACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAAAG--TTGGCGTGA 11712 || ||||| |||| | | || |||||||| ||| | |||| | | ||| | | Sbjct 18849 ACGGGCGGCGGCGAGATGAAAGACTTCTTCGACAAC--ATCGCCAAGGGCAGCGGCCTCA 18906 Query 11713 CCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCTTGGCTTGTACGTCTCGAGCC 11772 ||| || ||||| || ||| |||||| | ||||| ||| ||||| || |||| Sbjct 18907 CCGTCGAGAGCTTCCGCAAGCTGTCTGGCCCCGACGCCCTGGGCCTGTACTTCAAAAGCC 18966 Query 11773 TGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGAGGCTATTGCGAGCG 11832 |||| ||||| || | |||||||| ||||| ||| | ||||| || || |||| Sbjct 18967 TGGAGAAGGCGAACCTGTCGCAGTCGGAGCTGACCAGCTACATGGAGGCCATCGCCAGCG 19026 Query 11833 AT 11834 || Sbjct 19027 AT 19028 >seq12839 Length=204338 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 53982 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 54040 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 54218 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 54276 >seq10981 Length=80740 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 57901 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTGAGAGTTCGAGTCTCTCCTTTCGCACCA 57843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180409332418104