Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq7029 107 7e-19
seq10588 102 3e-17
seq12839 93.3 2e-14
seq10981 89.7 2e-13
>seq7029
Length=148368
Score = 107 bits (118), Expect = 7e-19
Identities = 125/165 (76%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCG-- 48971
||||| || |||||| |||| | ||||||||| | | || | ||||||||||||
Sbjct 76562 TGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACCGTT 76621
Query 48972 CGGATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGC 49031
||| || ||| ||| | || |||||||| || | |||||| ||||| || |||||
Sbjct 76622 CGG-TG-GAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGCGC 76679
Query 49032 CATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076
||||||||| || || |||||| | |||||| | |||||||||||
Sbjct 76680 CATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGA 76724
>seq10588
Length=38962
Score = 102 bits (112), Expect = 3e-17
Identities = 169/242 (70%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 11595 CAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGGCGACTTCCTCAAT 11654
||||||||||| || || |||||||||||||| | || ||| | ||||||| | | |
Sbjct 18789 CAAGAGAAGCTGGCCGATATCTTCAAGGACGTGCAGGAGAAGATCGGCGACTACGCCCAA 18848
Query 11655 ACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAAAG--TTGGCGTGA 11712
|| ||||| |||| | | || |||||||| ||| | |||| | | ||| | |
Sbjct 18849 ACGGGCGGCGGCGAGATGAAAGACTTCTTCGACAAC--ATCGCCAAGGGCAGCGGCCTCA 18906
Query 11713 CCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCTTGGCTTGTACGTCTCGAGCC 11772
||| || ||||| || ||| |||||| | ||||| ||| ||||| || ||||
Sbjct 18907 CCGTCGAGAGCTTCCGCAAGCTGTCTGGCCCCGACGCCCTGGGCCTGTACTTCAAAAGCC 18966
Query 11773 TGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGAGGCTATTGCGAGCG 11832
|||| ||||| || | |||||||| ||||| ||| | ||||| || || ||||
Sbjct 18967 TGGAGAAGGCGAACCTGTCGCAGTCGGAGCTGACCAGCTACATGGAGGCCATCGCCAGCG 19026
Query 11833 AT 11834
||
Sbjct 19027 AT 19028
>seq12839
Length=204338
Score = 93.3 bits (102), Expect = 2e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 53982 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 54040
Score = 93.3 bits (102), Expect = 2e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 54218 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 54276
>seq10981
Length=80740
Score = 89.7 bits (98), Expect = 2e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
|| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 57901 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTGAGAGTTCGAGTCTCTCCTTTCGCACCA 57843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180409332418104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |