Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8560 95.1 2e-14 seq3764 86.0 9e-12 seq5233 84.2 3e-11 >seq8560 Length=3069389 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || ||||| | ||| || || ||| || || || || || || Sbjct 2390301 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2390243 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| ||||||||| || ||||| Sbjct 2390242 CAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGG 2390184 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2390183 AATTCCTTCCTTATCCTG 2390166 >seq3764 Length=1885950 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108 |||||| | |||||| || || | ||| | ||| || || ||| || || || || || | Sbjct 1780319 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 1780261 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || | ||| || ||| |||| |||| ||||||||| || |||| Sbjct 1780260 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAG 1780201 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 1780200 GAATTCCTTCCTTATCCTG 1780182 >seq5233 Length=2008183 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || ||||| || |||||||| |||| |||||||||||| ||||||||||||| ||| Sbjct 1606588 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTTT 1606647 Query 146182 ATCTTG 146187 |||||| Sbjct 1606648 ATCTTG 1606653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743386440449280