Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq8560 95.1 2e-14
seq3764 86.0 9e-12
seq5233 84.2 3e-11
>seq8560
Length=3069389
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/138 (77%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || ||||| | ||| || || ||| || || || || || ||
Sbjct 2390301 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2390243
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| ||||||||||| |||| ||||||||| || |||||
Sbjct 2390242 CAAAGTACGTCCATCTTCCACTTGCTTTCCAGCAAAGATCAGTCTTTGCTG-TCAGGAGG 2390184
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 2390183 AATTCCTTCCTTATCCTG 2390166
>seq3764
Length=1885950
Score = 86.0 bits (94), Expect = 9e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108
|||||| | |||||| || || | ||| | ||| || || ||| || || || || || |
Sbjct 1780319 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 1780261
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | ||| | | ||| || | ||| || ||| |||| |||| ||||||||| || ||||
Sbjct 1780260 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAG 1780201
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||| ||||| ||
Sbjct 1780200 GAATTCCTTCCTTATCCTG 1780182
>seq5233
Length=2008183
Score = 84.2 bits (92), Expect = 3e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181
||| || ||||| || |||||||| |||| |||||||||||| ||||||||||||| |||
Sbjct 1606588 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTTT 1606647
Query 146182 ATCTTG 146187
||||||
Sbjct 1606648 ATCTTG 1606653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743386440449280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |