Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq12661 100 2e-16
seq9853 100 2e-16
seq6889 93.3 3e-14
seq899 91.5 1e-13
>seq12661
Length=3984070
Score = 100 bits (110), Expect = 2e-16
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| |||| | ||||||||||| | || |||||||| || |||||||| |||
Sbjct 2676681 CCGCCTTGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 2676622
Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| ||| || | || |||| ||| ||||| || || || || | ||||||||| ||
Sbjct 2676621 AAAGTGA-GGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGG 2676563
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || ||||||||| || ||| ||||| | || | | | || | | ||||
Sbjct 2676562 GATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGA 2676504
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
| || | |||||||| ||||| || || || |||||||||||||||||| ||
Sbjct 2676503 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 2676451
>seq9853
Length=4041771
Score = 100 bits (110), Expect = 2e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | ||||||||||| | || |||||||| || |||||||| |||
Sbjct 359783 CCGCCTCGCAGACGAAGCACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGAC 359842
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || | || ||| ||||| | ||| || || ||||||||||| ||
Sbjct 359843 AGAGTGCGGCCATCCTGCAGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGG 359902
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||| ||| || ||| ||||| | | | || | || | | |||||
Sbjct 359903 ATGCCCTCCTCGTCTTGGAT-TTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGAC 359961
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| | || || |||||||||||||||||| ||
Sbjct 359962 CTCAAGAGTGATGGTCTTGCCCATCAGCGTCTTCACAAAGATCTGCATCTCT 360013
>seq6889
Length=11136585
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240
|||||||| | || |||||||| |||||||| || || || ||| || |||
Sbjct 1034027 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTCC 1034086
Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300
| ||||||||| || || ||||||| ||||||||| ||| | || ||||| ||
Sbjct 1034087 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1034146
Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360
||||| ||| | | | || | || | | || || |||| |||||||| |||
Sbjct 1034147 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1034206
Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || || ||||| |||||||||||
Sbjct 1034207 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
>seq899
Length=2520420
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 2264645 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264704
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || || || || |||| ||||||||| ||| | || ||| |||||
Sbjct 2264705 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264764
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 2264765 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2264824
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || | || ||||| ||||||||||||
Sbjct 2264825 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATC 2264857
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 2264873 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2264932
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || || || || |||| ||||||||| ||| | || ||| |||||
Sbjct 2264933 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2264992
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 2264993 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2265052
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || | || ||||| ||||||||||||
Sbjct 2265053 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATC 2265085
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 2265101 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 2265160
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || || || || |||| ||||||||| ||| | || ||| |||||
Sbjct 2265161 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 2265220
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 2265221 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2265280
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || | || ||||| ||||||||||||
Sbjct 2265281 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATC 2265313
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||| ||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 2264416 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 2264475
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||| || || || || || |||| ||||||||| ||| | || ||| |||||
Sbjct 2264476 TTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 2264535
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 2264536 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 2264595
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || | || ||||| ||||||||||||
Sbjct 2264596 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCATC 2264629
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| ||||||||||| ||||| || | ||
Sbjct 2265329 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2265388
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || || || || | || ||| ||||| ||| | || || || ||
Sbjct 2265389 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGGATGCCTTCTTTTTCT 2265448
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | || | || | | || || |||| || ||||||
Sbjct 2265449 TGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGAGTAATGGTT 2265508
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || ||||| || || ||||||||||||||
Sbjct 2265509 TTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323012706091040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |