Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8995 356 2e-93 seq608 107 2e-18 seq7661 98.7 9e-16 >seq8995 Length=8301158 Score = 356 bits (394), Expect = 2e-93 Identities = 627/906 (69%), Gaps = 18/906 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || ||||||||| ||| |||| | |||| || || |||||||| ||||| Sbjct 6971343 ATTCTCTGTTGGATTTGACATCACTCCCATTCTCTGATTCTCGCTTACTCTCTTCTCAAA 6971402 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TT 16027 ||| || || || || || | |||||||||||||||||| ||||| ||||||| || Sbjct 6971403 GAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTT 6971462 Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 ||| || | | | | |||| |||| || | |||||| ||||| || || || Sbjct 6971463 GAA-AACCTTGCTAA----AGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATG 6971517 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 ||||| ||||| ||| || ||||| || || | || ||||| | || || || | Sbjct 6971518 TACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGG 6971577 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGA 16207 || | | |||||| |||| || | | |||||| || ||||| | || ||| || | Sbjct 6971578 AACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCCTTTACT-CTCTGTTT--CGAA 6971634 Query 16208 GGGTTT---AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCC 16264 || || || | |||||| ||||| | || | ||| ||||| ||||| || || || Sbjct 6971635 GGTTTGTGCAACAGGTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCT 6971694 Query 16265 CTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAA 16324 || || || | || || ||||| || || || ||||| ||||||||||| || | ||| Sbjct 6971695 CTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAG 6971754 Query 16325 AATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAAT 16384 ||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| || |||| Sbjct 6971755 AATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACA 6971814 Query 16385 CGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgt 16444 || || || || || | ||| | |||| ||||||| ||| || | Sbjct 6971815 CGTTCTCCATATGTAGCTTCTTTGTCCCCAGTCCAGCGCAAGGCCCAATCTGCCTTCTTC 6971874 Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAA 16504 || ||||| ||| |||| || ||||| || | | | | |||||||| |||| | Sbjct 6971875 TTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTA 6971934 Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| || || || | |||||||||||| ||||| || || ||||| || || || Sbjct 6971935 ATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 6971994 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || ||||| || || ||| |||| || || ||||| | ||||| || | ||| Sbjct 6971995 AAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAG 6972054 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| || ||||| ||||| || |||||||| || || || | || |||||||| | Sbjct 6972055 TTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATAT 6972114 Query 16685 ttttCGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 | || | | || | | || ||||| || || || || | || ||||| || Sbjct 6972115 CTCTCCTCAGGCTTCAGGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTC 6972173 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAAT 16803 | |||||||| ||||| |||| || |||||||| | ||| || || | ||| | || Sbjct 6972174 AGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGAT 6972233 Query 16804 AGGAAA 16809 |||||| Sbjct 6972234 AGGAAA 6972239 Score = 232 bits (256), Expect = 6e-56 Identities = 342/480 (71%), Gaps = 16/480 (3%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | ||||| || | |||||||| |||||||| || || || | Sbjct 6968489 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 6968548 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTT 16041 | || | |||||||||||||||||| ||||| ||||||| ||||| || | | Sbjct 6968549 CCTCCAGTGAAATATTTTCCATAAAGTCAAACGGATTTTCTACTTTGAA-AACCTTGCTA 6968607 Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 | | |||| |||| || | |||||| ||||| || || || ||||| ||||| || Sbjct 6968608 A----AGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTACTGCTTCATCAA 6968663 Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 | || ||||| || || | || ||||| | || || || | || | | |||||| Sbjct 6968664 AGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTAAGGAACTCCTGTTCTAT 6968723 Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT---AATAA 16218 |||| || | | |||||| || ||||| | || ||| || ||| || || | Sbjct 6968724 CCTAACTGCATTGACGATTATTTCCTTTACT-CTCTGTTT--CGAAGGTTTGTGCAACAG 6968780 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 |||||| ||||| | || | ||| ||||| ||||| || || || || || || | || Sbjct 6968781 GTGTTTGAACATCAGGCAGGTAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTC 6968840 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 || ||||| || || || ||||| ||||||||||| || | ||| ||||||| ||||| Sbjct 6968841 ATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATAGACGCAAA 6968900 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT 16398 ||||| |||||||| || ||||| ||||| ||||| || |||| || || || || || Sbjct 6968901 AGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGT 6968960 >seq608 Length=3558542 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 2099025 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 2098966 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 2098965 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 2098906 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 2098905 CCATAAAATCAAAGGGATTTTCTG 2098882 >seq7661 Length=1898141 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 818597 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 818538 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 818537 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 818478 Query 16379 ACCA 16382 |||| Sbjct 818477 ACCA 818474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||||||||| || || || | |||||||||||| ||||| || | Sbjct 816939 TTTCTTTGGAATCTTTAATATAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 816880 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || ||| |||| || || ||||| Sbjct 816879 TTTCCATGGCAATTTGGAAGCCATAGAAACAAGGAGCCTCGGTAATCTGAACTTC 816825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462424937897400