Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq899 125 6e-24
seq6889 105 5e-18
seq9853 98.7 8e-16
seq11633 84.2 2e-11
>seq899
Length=2520420
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| |
Sbjct 2264402 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264461
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| ||||| || |||| || ||| ||||| || ||
Sbjct 2264462 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264521
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| || || ||| || | | | | |||| | |||||||
Sbjct 2264522 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264581
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || ||||||||||||| |||||||| ||||| |||||
Sbjct 2264582 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264628
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 2264630 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264689
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| ||||| || |||| || ||| ||||| || ||
Sbjct 2264690 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264749
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| || || ||| || | | | | |||| | |||||||
Sbjct 2264750 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2264809
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || ||||||||||||| |||||||| ||||| |||||
Sbjct 2264810 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2264856
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 2264858 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2264917
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| ||||| || |||| || ||| ||||| || ||
Sbjct 2264918 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2264977
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| || || ||| || | | | | |||| | |||||||
Sbjct 2264978 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265037
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || ||||||||||||| |||||||| ||||| |||||
Sbjct 2265038 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265084
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 2265086 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265145
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| ||||| || |||| || ||| ||||| || ||
Sbjct 2265146 AGGGTGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2265205
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| || || ||| || | | | | |||| | |||||||
Sbjct 2265206 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 2265265
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || ||||||||||||| |||||||| ||||| |||||
Sbjct 2265266 TCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2265312
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| | | | |||| |||||| ||| ||| ||||| ||||||||||| |
Sbjct 2265314 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2265373
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| ||||| || ||||||| ||||||||| || ||
Sbjct 2265374 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGG 2265433
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || || || || || ||| || | | | | |||| | |||||||
Sbjct 2265434 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTTGGCTCCACC 2265493
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||||| || || || || || ||||| |||||||| |||||
Sbjct 2265494 TCCAGAGTAATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 2265540
>seq6889
Length=11136585
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| |||| | | |||| |||||| || ||||||||| |||||||| ||
Sbjct 1034237 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1034296
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || || ||||| || || | || ||| ||||| || ||
Sbjct 1034297 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1034356
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||| ||| || || ||| || | | | | |||| | |||||||
Sbjct 1034357 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1034416
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||| ||| || |||||||| ||||| || ||||| ||||||||||| |||
Sbjct 1034417 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 1034467
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| || ||| |||||||||||||| || || ||| | || |||
Sbjct 1033799 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1033858
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || ||||| || || | || ||| ||||| || || | || ||||| |||
Sbjct 1033859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1033918
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| |||||| ||| || | ||||
Sbjct 1033919 ATCTTGGCCTTCACGTTCTCGGTGGTGTCACTGGGCTCTTCCTCCAGGGTGATGGCCTTG 1033978
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 1033979 CCGGTCAGGGTCTTCACGAAGATCTGCAT 1034007
>seq9853
Length=4041771
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| || |||||||| ||| ||| | || | |
Sbjct 359801 ACCAGGTGCAGGGTGAACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTGC 359860
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| |||| ||| |||| ||||| ||||| || || | ||||||| |||
Sbjct 359861 AGCTGTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGG 359920
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | |||| | ||| ||||| | || || ||||||
Sbjct 359921 ATTTTGGCTTTGACACTTTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 359980
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| |||| |||||||||||||| |||||
Sbjct 359981 CCCATCAGCGTCTTCACAAAGATCTGCAT 360009
>seq11633
Length=4562951
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/154 (73%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC- 45243
||||| ||| | || ||||| |||| |||||||||| || || | |||||||||||
Sbjct 4176158 TCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCT 4176099
Query 45244 CGCAATTTTTTGCTTA-ACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302
|| | |||| |||| || | | | |||| | ||| ||| | | |||||| |
Sbjct 4176098 CGGA--TTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCACAAGGGTAATGG 4176041
Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||| |||||||||||||| |||||
Sbjct 4176040 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 4176007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395002691231239
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