Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq12661 95.1 9e-15
seq6889 91.5 1e-13
seq3764 84.2 2e-11
seq504 82.4 6e-11
>seq12661
Length=3984070
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || || || ||||| || || |||||||| | || || | |||
Sbjct 2676667 AAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATC 2676608
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|||| |||||||||||| |||| || | || || || || | ||| ||||| ||
Sbjct 2676607 CTCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTC 2676548
Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291
|||| | || ||||| | || |||||||| ||||||| |||| |||||||
Sbjct 2676547 TTGGATTT-TGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGG 2676489
Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| |||| || || ||||| || |||||
Sbjct 2676488 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455
>seq6889
Length=11136585
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || |||||||| || | | || | ||||
Sbjct 1034252 AGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1034311
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||||||||||||
Sbjct 1034312 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1034371
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | | | ||||||| |||||| || | ||||||| |
Sbjct 1034372 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1034431
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||||| ||||| || || |||||||||||
Sbjct 1034432 TTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 1034466
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| ||| || || || ||||| || |||||||| || | | || ||||||||
Sbjct 1034026 TACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTC 1034085
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
|| || ||||| ||| |||| || || || || || ||| | ||||||||||||
Sbjct 1034086 CAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTG 1034145
Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|| | ||| || | | | ||||||| |||||| || | ||||||| | ||
Sbjct 1034146 GATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTT 1034205
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||||||| || || || || || |||||
Sbjct 1034206 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235
>seq3764
Length=1885950
Score = 84.2 bits (92), Expect = 2e-11
Identities = 168/248 (68%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTA--TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| ||| || || ||||| | || | ||||| || || |
Sbjct 1780341 AAGACTTCTTCCTTTTCTTAGCTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACT 1780282
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || || | |||||||| ||| ||||| || |||
Sbjct 1780281 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGA 1780222
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| |||||||| || || || | ||||||||||| || | ||| || | |
Sbjct 1780221 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTC 1780162
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| | || || ||||||| |||| |||||| | || || ||| || || || |
Sbjct 1780161 CTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGA 1780102
Query 18316 AAATTTGC 18323
|||| |||
Sbjct 1780101 AAATCTGC 1780094
>seq504
Length=1076656
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 18124 GAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTT 18183
|||| || | || ||||||||||||||||| | || || | |||||||| ||| |
Sbjct 268479 GAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCT 268420
Query 18184 TGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTT 18243
|||| ||| |||| |||||||| || || || | ||||||||||| || |
Sbjct 268419 TGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGG 268360
Query 18244 GCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCA 18303
|||| || | | | || || ||||||| |||| |||||| | || || ||||
Sbjct 268359 GCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTTCCCTGTCA 268300
Query 18304 ATGTTTTTACAAAAATTTGCATTTT 18328
|| || || ||||| ||||| ||
Sbjct 268299 GGGTCTTCACGAAAATCTGCATCTT 268275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379274378402955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |