Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12661 95.1 9e-15 seq6889 91.5 1e-13 seq3764 84.2 2e-11 seq504 82.4 6e-11 >seq12661 Length=3984070 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || || ||||| || || |||||||| | || || | ||| Sbjct 2676667 AAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAAAGTGAGGCCATC 2676608 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| |||||||||||| |||| || | || || || || | ||| ||||| || Sbjct 2676607 CTCCAGCTGTTTGCCCGCAAAGATCAGACACTGCTGGTCAGGTGGGATGCCCTCCTTGTC 2676548 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 |||| | || ||||| | || |||||||| ||||||| |||| ||||||| Sbjct 2676547 TTGGATTT-TGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGGGTGATGG 2676489 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||| || || ||||| || ||||| Sbjct 2676488 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2676455 >seq6889 Length=11136585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || |||||||| || | | || | |||| Sbjct 1034252 AGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1034311 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 1034312 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1034371 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 1034372 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1034431 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| ||||| || || ||||||||||| Sbjct 1034432 TTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 1034466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| || || || ||||| || |||||||| || | | || |||||||| Sbjct 1034026 TACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCAATCTTC 1034085 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 1034086 CAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTG 1034145 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | ||| || | | | ||||||| |||||| || | ||||||| | || Sbjct 1034146 GATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTT 1034205 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || || || || ||||| Sbjct 1034206 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1034235 >seq3764 Length=1885950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/248 (68%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTA--TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| ||| || || ||||| | || | ||||| || || | Sbjct 1780341 AAGACTTCTTCCTTTTCTTAGCTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACT 1780282 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| || ||| Sbjct 1780281 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGA 1780222 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| || || || | ||||||||||| || | ||| || | | Sbjct 1780221 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTC 1780162 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||||||| |||| |||||| | || || ||| || || || | Sbjct 1780161 CTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCCCTCAGGGTCTTCACGA 1780102 Query 18316 AAATTTGC 18323 |||| ||| Sbjct 1780101 AAATCTGC 1780094 >seq504 Length=1076656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18124 GAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTT 18183 |||| || | || ||||||||||||||||| | || || | |||||||| ||| | Sbjct 268479 GAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCT 268420 Query 18184 TGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTT 18243 |||| ||| |||| |||||||| || || || | ||||||||||| || | Sbjct 268419 TGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGG 268360 Query 18244 GCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCA 18303 |||| || | | | || || ||||||| |||| |||||| | || || |||| Sbjct 268359 GCTTTACGTTTTCTGTTGTATCCGAGGGCTCGACGTCAAGAGTGATGGTCTTCCCTGTCA 268300 Query 18304 ATGTTTTTACAAAAATTTGCATTTT 18328 || || || ||||| ||||| || Sbjct 268299 GGGTCTTCACGAAAATCTGCATCTT 268275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379274378402955