Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq13960 116 3e-21
seq504 100 3e-16
>seq13960
Length=3940437
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 2057880 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2057939
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||
Sbjct 2057940 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 2057999
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 2058000 CCTGTCTCTGTCTGAGACTCAATGATGGC 2058028
>seq504
Length=1076656
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| |||||||| || || ||||| | ||||| || ||
Sbjct 268275 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCC 268334
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||| || || | | || ||| |||||||| | || || |||
Sbjct 268335 TCGGATACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 268394
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | ||| ||| || || ||
Sbjct 268395 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 268453
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | ||||||| ||| || | |||||
Sbjct 268454 CAACATTCAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445682490047280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |