Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13960 116 3e-21 seq504 100 3e-16 >seq13960 Length=3940437 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 2057880 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2057939 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 2057940 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 2057999 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 2058000 CCTGTCTCTGTCTGAGACTCAATGATGGC 2058028 >seq504 Length=1076656 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||||||| || || ||||| | ||||| || || Sbjct 268275 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGACGTCGAGCCC 268334 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | | || ||| |||||||| | || || ||| Sbjct 268335 TCGGATACAACAGAAAACGTAAAGCCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 268394 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | ||| ||| || || || Sbjct 268395 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 268453 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||| ||| || | ||||| Sbjct 268454 CAACATTCAAAAGGAGTTCACTCTTCGTCTAGTGTTGAGACT 268495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445682490047280