Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq8995 150 4e-31
>seq8995
Length=8301158
Score = 150 bits (166), Expect = 4e-31
Identities = 297/438 (68%), Gaps = 5/438 (1%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||||||||| ||||| ||||||||| ||| | || || || || ||||||
Sbjct 6968942 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6968883
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | ||||||| ||||| | |||||||| | ||| || ||
Sbjct 6968882 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6968823
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096
|| ||| | || | |||||| | ||| || |||| ||| | ||||| | | ||
Sbjct 6968822 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACA----CCTGTTGCACAAACC 6968767
Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156
|| | | | || | ||||| || | || || | || ||||| || || ||
Sbjct 6968766 TTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 6968707
Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216
|| | |||||||||| || | | || ||||| |||| ||||||| ||||||||
Sbjct 6968706 TACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 6968647
Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276
|| || |||||||||| ||| || | || |||| | ||| | || ||
Sbjct 6968646 CGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGA 6968587
Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336
|| || || || ||||| |||||||| || ||| ||||| ||||| ||||| ||
Sbjct 6968586 AAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAA 6968527
Query 102337 GAGAGTCGCCGAGTATCA 102354
|||||| | |||||||||
Sbjct 6968526 GAGAGTAGGCGAGTATCA 6968509
Score = 141 bits (156), Expect = 2e-28
Identities = 295/438 (67%), Gaps = 5/438 (1%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||||||||| ||||| ||||||||| ||| | || || || || ||||||
Sbjct 6971810 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6971751
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | ||||||| ||||| | |||||||| | ||| || ||
Sbjct 6971750 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096
|| ||| | || | |||||| | ||| || |||| ||| | ||||| | | ||
Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACA----CCTGTTGCACAAACC 6971635
Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156
|| | | | || | ||||| || | || || | || ||||| || || ||
Sbjct 6971634 TTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 6971575
Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216
|| | |||||||||| || | | || ||||| |||| ||||||| ||||||||
Sbjct 6971574 TACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 6971515
Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276
|| || |||||||||| ||| || | || |||| | ||| | || ||
Sbjct 6971514 CGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGA 6971455
Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336
|| || || || ||||| |||||||| || ||| ||||| ||||| ||||| ||
Sbjct 6971454 AAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAA 6971395
Query 102337 GAGAGTCGCCGAGTATCA 102354
|||||| |||| ||||
Sbjct 6971394 GAGAGTAAGCGAGAATCA 6971377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989393066261345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |