Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq8995 150 4e-31 >seq8995 Length=8301158 Score = 150 bits (166), Expect = 4e-31 Identities = 297/438 (68%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| ||| | || || || || |||||| Sbjct 6968942 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6968883 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | |||||||| | ||| || || Sbjct 6968882 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6968823 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096 || ||| | || | |||||| | ||| || |||| ||| | ||||| | | || Sbjct 6968822 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACA----CCTGTTGCACAAACC 6968767 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 || | | | || | ||||| || | || || | || ||||| || || || Sbjct 6968766 TTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 6968707 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 || | |||||||||| || | | || ||||| |||| ||||||| |||||||| Sbjct 6968706 TACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 6968647 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 || || |||||||||| ||| || | || |||| | ||| | || || Sbjct 6968646 CGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGA 6968587 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||||||| || ||| ||||| ||||| ||||| || Sbjct 6968586 AAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAA 6968527 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| | ||||||||| Sbjct 6968526 GAGAGTAGGCGAGTATCA 6968509 Score = 141 bits (156), Expect = 2e-28 Identities = 295/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| ||| | || || || || |||||| Sbjct 6971810 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCTGG 6971751 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | |||||||| | ||| || || Sbjct 6971750 CTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 6971691 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG-ATACCCC 102096 || ||| | || | |||||| | ||| || |||| ||| | ||||| | | || Sbjct 6971690 GAGGGTTTGCACTGTGACTTTACCTGCCTGATGTTCAAACA----CCTGTTGCACAAACC 6971635 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 || | | | || | ||||| || | || || | || ||||| || || || Sbjct 6971634 TTCGAAACAGAGAGTAAAGGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCT 6971575 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 || | |||||||||| || | | || ||||| |||| ||||||| |||||||| Sbjct 6971574 TACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACAT 6971515 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 || || |||||||||| ||| || | || |||| | ||| | || || Sbjct 6971514 CGAGTTCGTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAGGTTTTCAAAGTAGA 6971455 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||||||| || ||| ||||| ||||| ||||| || Sbjct 6971454 AAATCCGTTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAA 6971395 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| |||| |||| Sbjct 6971394 GAGAGTAAGCGAGAATCA 6971377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989393066261345